Experiment: minimal media, aerobic, 0G configuration
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0595 and SO0596 are separated by 58 nucleotides SO0596 and SO0597 are separated by 128 nucleotides SO0597 and yjeF overlap by 29 nucleotides
SO0595: SO0595 - hypothetical protein (NCBI ptt file), at 621,282 to 621,833
SO0595
SO0596: SO0596 - ISSod4, transposase (NCBI ptt file), at 621,892 to 623,094
SO0596
SO0597: SO0597 - hypothetical protein (NCBI ptt file), at 623,223 to 623,426
SO0597
SO0598: yjeF - yjeF protein (NCBI ptt file), at 623,398 to 624,897
yjeF
Position (kb) 621
622
623
624 Strain fitness (log2 ratio) -1
0
1
2 at 620.936 kb on - strand at 620.950 kb on - strand at 620.951 kb on - strand at 620.953 kb on + strand at 620.953 kb on + strand at 620.953 kb on + strand at 620.953 kb on + strand at 620.953 kb on + strand at 620.958 kb on + strand at 620.958 kb on + strand at 620.961 kb on - strand at 620.961 kb on - strand at 620.961 kb on - strand at 620.966 kb on - strand at 620.966 kb on - strand at 620.971 kb on - strand at 621.070 kb on + strand at 621.070 kb on + strand at 621.070 kb on + strand at 621.070 kb on + strand at 621.118 kb on + strand at 621.118 kb on + strand at 621.118 kb on + strand at 621.126 kb on - strand at 621.126 kb on - strand at 621.149 kb on - strand at 621.208 kb on - strand at 621.223 kb on + strand at 621.231 kb on - strand at 621.279 kb on + strand at 621.349 kb on + strand, within SO0595 at 621.349 kb on + strand, within SO0595 at 621.349 kb on + strand, within SO0595 at 621.369 kb on - strand, within SO0595 at 621.371 kb on + strand, within SO0595 at 621.380 kb on - strand, within SO0595 at 621.432 kb on - strand, within SO0595 at 621.438 kb on + strand, within SO0595 at 621.443 kb on + strand, within SO0595 at 621.452 kb on - strand, within SO0595 at 621.452 kb on - strand, within SO0595 at 621.469 kb on - strand, within SO0595 at 621.471 kb on + strand, within SO0595 at 621.479 kb on - strand, within SO0595 at 621.483 kb on - strand, within SO0595 at 621.552 kb on + strand, within SO0595 at 621.570 kb on + strand, within SO0595 at 621.625 kb on - strand, within SO0595 at 621.655 kb on + strand, within SO0595 at 621.718 kb on - strand, within SO0595 at 621.733 kb on + strand, within SO0595 at 621.733 kb on + strand, within SO0595 at 621.741 kb on - strand, within SO0595 at 621.753 kb on + strand, within SO0595 at 621.753 kb on + strand, within SO0595 at 621.753 kb on + strand, within SO0595 at 621.753 kb on + strand, within SO0595 at 621.753 kb on + strand, within SO0595 at 621.753 kb on + strand, within SO0595 at 621.753 kb on + strand, within SO0595 at 621.753 kb on + strand, within SO0595 at 621.753 kb on + strand, within SO0595 at 621.753 kb on + strand, within SO0595 at 621.753 kb on + strand, within SO0595 at 621.753 kb on + strand, within SO0595 at 621.753 kb on + strand, within SO0595 at 621.753 kb on + strand, within SO0595 at 621.753 kb on + strand, within SO0595 at 621.753 kb on + strand, within SO0595 at 621.753 kb on + strand, within SO0595 at 621.753 kb on + strand, within SO0595 at 621.753 kb on + strand, within SO0595 at 621.753 kb on + strand, within SO0595 at 621.753 kb on + strand, within SO0595 at 621.753 kb on + strand, within SO0595 at 621.753 kb on + strand, within SO0595 at 621.753 kb on + strand, within SO0595 at 621.753 kb on + strand, within SO0595 at 621.753 kb on + strand, within SO0595 at 621.753 kb on + strand, within SO0595 at 621.753 kb on + strand, within SO0595 at 621.761 kb on - strand, within SO0595 at 621.761 kb on - strand, within SO0595 at 621.761 kb on - strand, within SO0595 at 621.761 kb on - strand, within SO0595 at 621.761 kb on - strand, within SO0595 at 621.761 kb on - strand, within SO0595 at 621.761 kb on - strand, within SO0595 at 621.761 kb on - strand, within SO0595 at 621.761 kb on - strand, within SO0595 at 621.761 kb on - strand, within SO0595 at 621.761 kb on - strand, within SO0595 at 621.761 kb on - strand, within SO0595 at 621.761 kb on - strand, within SO0595 at 621.761 kb on - strand, within SO0595 at 621.761 kb on - strand, within SO0595 at 621.761 kb on - strand, within SO0595 at 621.761 kb on - strand, within SO0595 at 621.761 kb on - strand, within SO0595 at 621.761 kb on - strand, within SO0595 at 621.761 kb on - strand, within SO0595 at 621.761 kb on - strand, within SO0595 at 621.761 kb on - strand, within SO0595 at 621.761 kb on - strand, within SO0595 at 621.761 kb on - strand, within SO0595 at 621.761 kb on - strand, within SO0595 at 621.761 kb on - strand, within SO0595 at 621.761 kb on - strand, within SO0595 at 621.761 kb on - strand, within SO0595 at 621.761 kb on - strand, within SO0595 at 621.762 kb on - strand, within SO0595 at 621.796 kb on + strand at 621.803 kb on + strand at 621.803 kb on - strand at 621.804 kb on - strand at 621.809 kb on - strand at 621.811 kb on - strand at 623.147 kb on + strand at 623.316 kb on - strand, within SO0597 at 623.322 kb on - strand, within SO0597 at 623.332 kb on - strand, within SO0597 at 623.350 kb on + strand, within SO0597 at 623.350 kb on + strand, within SO0597 at 623.350 kb on + strand, within SO0597 at 623.358 kb on - strand, within SO0597 at 623.358 kb on - strand, within SO0597 at 623.409 kb on - strand at 623.424 kb on - strand at 623.448 kb on + strand at 623.450 kb on - strand at 623.489 kb on - strand at 623.570 kb on - strand, within yjeF at 623.574 kb on + strand, within yjeF at 623.575 kb on - strand, within yjeF at 623.581 kb on - strand, within yjeF at 623.646 kb on - strand, within yjeF at 623.734 kb on - strand, within yjeF at 623.780 kb on + strand, within yjeF at 623.788 kb on - strand, within yjeF at 623.788 kb on - strand, within yjeF at 623.807 kb on + strand, within yjeF at 623.807 kb on + strand, within yjeF at 623.815 kb on - strand, within yjeF at 623.815 kb on - strand, within yjeF at 623.820 kb on - strand, within yjeF at 623.827 kb on - strand, within yjeF at 624.022 kb on + strand, within yjeF at 624.022 kb on + strand, within yjeF at 624.022 kb on + strand, within yjeF at 624.030 kb on - strand, within yjeF
Per-strain Table
Position Strand Gene LocusTag Fraction minimal media, aerobic, 0G configuration remove 620,936 - +0.5 620,950 - -0.1 620,951 - -0.3 620,953 + -0.4 620,953 + -0.9 620,953 + -0.9 620,953 + +0.2 620,953 + -0.2 620,958 + +0.3 620,958 + -0.1 620,961 - +0.2 620,961 - +0.0 620,961 - -0.5 620,966 - +0.4 620,966 - -0.4 620,971 - +0.7 621,070 + -0.7 621,070 + -0.4 621,070 + +0.3 621,070 + +0.4 621,118 + -0.3 621,118 + +1.1 621,118 + +0.6 621,126 - -0.2 621,126 - +0.1 621,149 - -0.4 621,208 - +0.6 621,223 + -0.6 621,231 - +0.4 621,279 + +0.1 621,349 + SO0595 0.12 -0.3 621,349 + SO0595 0.12 -0.7 621,349 + SO0595 0.12 +0.3 621,369 - SO0595 0.16 -0.1 621,371 + SO0595 0.16 -1.2 621,380 - SO0595 0.18 +0.3 621,432 - SO0595 0.27 +0.2 621,438 + SO0595 0.28 +0.3 621,443 + SO0595 0.29 +0.3 621,452 - SO0595 0.31 +0.4 621,452 - SO0595 0.31 -0.2 621,469 - SO0595 0.34 +0.0 621,471 + SO0595 0.34 +0.2 621,479 - SO0595 0.36 -0.7 621,483 - SO0595 0.36 +0.1 621,552 + SO0595 0.49 -0.4 621,570 + SO0595 0.52 -0.6 621,625 - SO0595 0.62 +0.0 621,655 + SO0595 0.68 -1.0 621,718 - SO0595 0.79 +1.3 621,733 + SO0595 0.82 -0.5 621,733 + SO0595 0.82 +0.2 621,741 - SO0595 0.83 +1.0 621,753 + SO0595 0.85 -0.2 621,753 + SO0595 0.85 -0.1 621,753 + SO0595 0.85 +1.1 621,753 + SO0595 0.85 -0.7 621,753 + SO0595 0.85 +0.3 621,753 + SO0595 0.85 +0.6 621,753 + SO0595 0.85 -1.1 621,753 + SO0595 0.85 -0.1 621,753 + SO0595 0.85 +2.0 621,753 + SO0595 0.85 -0.1 621,753 + SO0595 0.85 +0.3 621,753 + SO0595 0.85 -0.9 621,753 + SO0595 0.85 -0.2 621,753 + SO0595 0.85 -0.6 621,753 + SO0595 0.85 -0.8 621,753 + SO0595 0.85 +0.1 621,753 + SO0595 0.85 -0.8 621,753 + SO0595 0.85 -1.2 621,753 + SO0595 0.85 +1.7 621,753 + SO0595 0.85 +0.6 621,753 + SO0595 0.85 +0.1 621,753 + SO0595 0.85 +0.0 621,753 + SO0595 0.85 +0.0 621,753 + SO0595 0.85 -0.3 621,753 + SO0595 0.85 -1.1 621,753 + SO0595 0.85 +2.0 621,753 + SO0595 0.85 -0.4 621,753 + SO0595 0.85 +0.3 621,761 - SO0595 0.87 -0.6 621,761 - SO0595 0.87 -0.7 621,761 - SO0595 0.87 -0.0 621,761 - SO0595 0.87 -0.6 621,761 - SO0595 0.87 -1.0 621,761 - SO0595 0.87 -0.1 621,761 - SO0595 0.87 +0.1 621,761 - SO0595 0.87 -0.3 621,761 - SO0595 0.87 -0.3 621,761 - SO0595 0.87 +0.2 621,761 - SO0595 0.87 +0.5 621,761 - SO0595 0.87 -0.0 621,761 - SO0595 0.87 +0.6 621,761 - SO0595 0.87 -0.0 621,761 - SO0595 0.87 +0.5 621,761 - SO0595 0.87 -0.8 621,761 - SO0595 0.87 +1.0 621,761 - SO0595 0.87 -0.8 621,761 - SO0595 0.87 +0.0 621,761 - SO0595 0.87 +0.4 621,761 - SO0595 0.87 +0.1 621,761 - SO0595 0.87 -0.1 621,761 - SO0595 0.87 +0.2 621,761 - SO0595 0.87 -0.2 621,761 - SO0595 0.87 +0.3 621,761 - SO0595 0.87 -0.9 621,761 - SO0595 0.87 -0.1 621,761 - SO0595 0.87 -0.0 621,761 - SO0595 0.87 +0.0 621,762 - SO0595 0.87 +0.7 621,796 + -0.1 621,803 + -0.4 621,803 - -0.4 621,804 - -0.8 621,809 - +1.7 621,811 - -0.0 623,147 + +0.1 623,316 - SO0597 0.46 +0.2 623,322 - SO0597 0.49 -0.3 623,332 - SO0597 0.53 -1.4 623,350 + SO0597 0.62 -0.2 623,350 + SO0597 0.62 -0.4 623,350 + SO0597 0.62 -1.2 623,358 - SO0597 0.66 +0.2 623,358 - SO0597 0.66 +2.0 623,409 - +0.6 623,424 - -0.4 623,448 + -0.2 623,450 - -0.5 623,489 - +0.1 623,570 - yjeF SO0598 0.11 -0.0 623,574 + yjeF SO0598 0.12 -0.1 623,575 - yjeF SO0598 0.12 -0.2 623,581 - yjeF SO0598 0.12 -0.8 623,646 - yjeF SO0598 0.17 +0.3 623,734 - yjeF SO0598 0.22 -0.7 623,780 + yjeF SO0598 0.25 +1.2 623,788 - yjeF SO0598 0.26 +0.4 623,788 - yjeF SO0598 0.26 +0.2 623,807 + yjeF SO0598 0.27 +0.8 623,807 + yjeF SO0598 0.27 -0.5 623,815 - yjeF SO0598 0.28 -0.3 623,815 - yjeF SO0598 0.28 -0.9 623,820 - yjeF SO0598 0.28 -0.8 623,827 - yjeF SO0598 0.29 +0.3 624,022 + yjeF SO0598 0.42 -0.0 624,022 + yjeF SO0598 0.42 -0.5 624,022 + yjeF SO0598 0.42 +0.4 624,030 - yjeF SO0598 0.42 -0.2
Or see this region's nucleotide sequence