Strain Fitness in Shewanella oneidensis MR-1 around SO0356

Experiment: minimal media, aerobic, 0G configuration

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO0355 and SO0356 are separated by 474 nucleotidesSO0356 and SO0357 are separated by 106 nucleotides SO0355: SO0355 - AMP-binding protein (NCBI ptt file), at 362,346 to 364,010 SO0355 SO0356: SO0356 - ISSod4, transposase (NCBI ptt file), at 364,485 to 365,687 SO0356 SO0357: SO0357 - metallo-beta-lactamase superfamily protein (NCBI ptt file), at 365,794 to 367,647 SO0357 Position (kb) 364 365 366Strain fitness (log2 ratio) -2 -1 0 1at 363.493 kb on + strand, within SO0355at 363.493 kb on + strand, within SO0355at 363.493 kb on + strand, within SO0355at 363.493 kb on + strand, within SO0355at 363.493 kb on + strand, within SO0355at 363.501 kb on - strand, within SO0355at 363.501 kb on - strand, within SO0355at 363.501 kb on - strand, within SO0355at 363.520 kb on + strand, within SO0355at 363.520 kb on + strand, within SO0355at 363.523 kb on - strand, within SO0355at 363.699 kb on - strand, within SO0355at 363.836 kb on + strand, within SO0355at 363.859 kb on + strandat 363.859 kb on + strandat 363.912 kb on + strandat 363.912 kb on + strandat 363.950 kb on - strandat 364.018 kb on + strandat 364.050 kb on + strandat 364.052 kb on - strandat 364.080 kb on + strandat 364.113 kb on + strandat 364.113 kb on + strandat 364.113 kb on + strandat 364.113 kb on + strandat 364.121 kb on - strandat 364.131 kb on - strandat 364.161 kb on + strandat 364.161 kb on + strandat 364.161 kb on + strandat 364.161 kb on + strandat 364.161 kb on + strandat 364.161 kb on + strandat 364.161 kb on + strandat 364.169 kb on - strandat 364.169 kb on - strandat 364.169 kb on - strandat 364.169 kb on - strandat 364.169 kb on - strandat 364.169 kb on - strandat 364.169 kb on - strandat 364.169 kb on - strandat 364.171 kb on + strandat 364.179 kb on - strandat 364.179 kb on - strandat 364.179 kb on - strandat 364.206 kb on + strandat 364.214 kb on - strandat 364.219 kb on + strandat 364.219 kb on + strandat 364.219 kb on + strandat 364.219 kb on + strandat 364.219 kb on + strandat 364.219 kb on - strandat 364.227 kb on - strandat 364.227 kb on - strandat 364.282 kb on - strandat 364.338 kb on - strandat 364.344 kb on - strandat 364.389 kb on + strandat 365.728 kb on - strandat 365.728 kb on - strandat 365.872 kb on - strandat 365.876 kb on + strandat 365.884 kb on - strandat 365.919 kb on + strandat 365.919 kb on + strandat 365.919 kb on + strandat 365.919 kb on + strandat 365.919 kb on + strandat 365.927 kb on - strandat 365.927 kb on - strandat 365.927 kb on - strandat 365.927 kb on - strandat 365.935 kb on + strandat 365.935 kb on + strandat 365.960 kb on - strandat 365.966 kb on + strandat 365.966 kb on + strandat 365.966 kb on + strandat 365.974 kb on - strandat 365.974 kb on - strandat 365.974 kb on - strandat 365.974 kb on - strandat 365.974 kb on - strandat 365.991 kb on + strand, within SO0357at 366.047 kb on + strand, within SO0357at 366.090 kb on - strand, within SO0357at 366.157 kb on + strand, within SO0357at 366.159 kb on - strand, within SO0357at 366.168 kb on - strand, within SO0357at 366.175 kb on + strand, within SO0357at 366.186 kb on + strand, within SO0357at 366.186 kb on + strand, within SO0357at 366.186 kb on + strand, within SO0357at 366.186 kb on + strand, within SO0357at 366.210 kb on + strand, within SO0357at 366.218 kb on - strand, within SO0357at 366.232 kb on - strand, within SO0357at 366.283 kb on + strand, within SO0357at 366.290 kb on + strand, within SO0357at 366.352 kb on + strand, within SO0357at 366.360 kb on - strand, within SO0357at 366.368 kb on - strand, within SO0357at 366.385 kb on + strand, within SO0357at 366.385 kb on + strand, within SO0357at 366.393 kb on - strand, within SO0357at 366.412 kb on + strand, within SO0357at 366.554 kb on - strand, within SO0357at 366.569 kb on - strand, within SO0357at 366.574 kb on + strand, within SO0357at 366.642 kb on - strand, within SO0357at 366.642 kb on - strand, within SO0357at 366.657 kb on - strand, within SO0357

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Per-strain Table

Position Strand Gene LocusTag Fraction minimal media, aerobic, 0G configuration
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363,493 + SO0355 0.69 +0.2
363,493 + SO0355 0.69 +0.1
363,493 + SO0355 0.69 -0.1
363,493 + SO0355 0.69 -0.6
363,493 + SO0355 0.69 +0.1
363,501 - SO0355 0.69 +0.1
363,501 - SO0355 0.69 +0.0
363,501 - SO0355 0.69 +0.5
363,520 + SO0355 0.71 -0.3
363,520 + SO0355 0.71 -0.8
363,523 - SO0355 0.71 +0.6
363,699 - SO0355 0.81 +0.2
363,836 + SO0355 0.89 +0.4
363,859 + +0.2
363,859 + -0.5
363,912 + -0.4
363,912 + -0.9
363,950 - -0.3
364,018 + +0.6
364,050 + +0.1
364,052 - -0.2
364,080 + +0.3
364,113 + -0.6
364,113 + -0.9
364,113 + -0.2
364,113 + -1.2
364,121 - +1.2
364,131 - -1.6
364,161 + +1.3
364,161 + +0.1
364,161 + -0.6
364,161 + +0.4
364,161 + +0.4
364,161 + -0.7
364,161 + -0.5
364,169 - -0.5
364,169 - +1.3
364,169 - +0.2
364,169 - -0.1
364,169 - -0.3
364,169 - +0.8
364,169 - -0.6
364,169 - -0.6
364,171 + -0.6
364,179 - -0.6
364,179 - +0.0
364,179 - +0.5
364,206 + +0.1
364,214 - +0.2
364,219 + +0.7
364,219 + +0.1
364,219 + -1.9
364,219 + -0.1
364,219 + -0.1
364,219 - +0.2
364,227 - +0.1
364,227 - -0.1
364,282 - -0.5
364,338 - +0.1
364,344 - -1.1
364,389 + +0.2
365,728 - +0.7
365,728 - +0.8
365,872 - -0.4
365,876 + +0.7
365,884 - -0.9
365,919 + -0.8
365,919 + +0.2
365,919 + +0.4
365,919 + +0.5
365,919 + -0.3
365,927 - +0.2
365,927 - +0.2
365,927 - -0.3
365,927 - +0.1
365,935 + -0.2
365,935 + +0.7
365,960 - +0.5
365,966 + -0.5
365,966 + -0.1
365,966 + +0.0
365,974 - -0.9
365,974 - -0.5
365,974 - -0.1
365,974 - -1.0
365,974 - -0.8
365,991 + SO0357 0.11 +0.0
366,047 + SO0357 0.14 +0.2
366,090 - SO0357 0.16 -0.5
366,157 + SO0357 0.20 +0.8
366,159 - SO0357 0.20 -0.4
366,168 - SO0357 0.20 -1.5
366,175 + SO0357 0.21 +0.4
366,186 + SO0357 0.21 -0.2
366,186 + SO0357 0.21 +0.0
366,186 + SO0357 0.21 -0.2
366,186 + SO0357 0.21 +0.7
366,210 + SO0357 0.22 -0.2
366,218 - SO0357 0.23 +0.5
366,232 - SO0357 0.24 -1.2
366,283 + SO0357 0.26 -0.7
366,290 + SO0357 0.27 -0.5
366,352 + SO0357 0.30 -0.8
366,360 - SO0357 0.31 -0.1
366,368 - SO0357 0.31 -1.6
366,385 + SO0357 0.32 +0.0
366,385 + SO0357 0.32 -0.5
366,393 - SO0357 0.32 +1.4
366,412 + SO0357 0.33 -0.9
366,554 - SO0357 0.41 -1.1
366,569 - SO0357 0.42 +0.3
366,574 + SO0357 0.42 -1.0
366,642 - SO0357 0.46 +0.5
366,642 - SO0357 0.46 -0.2
366,657 - SO0357 0.47 +0.5

Or see this region's nucleotide sequence