Strain Fitness in Shewanella oneidensis MR-1 around SO0228

Experiment: minimal media, aerobic, 0G configuration

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrpsL and rpsG are separated by 80 nucleotidesrpsG and fusA-1 are separated by 78 nucleotidesfusA-1 and tufA are separated by 71 nucleotides SO0226: rpsL - ribosomal protein S12 (NCBI ptt file), at 240,885 to 241,259 rpsL SO0227: rpsG - ribosomal protein S7 (NCBI ptt file), at 241,340 to 241,810 rpsG SO0228: fusA-1 - translation elongation factor G (NCBI ptt file), at 241,889 to 243,985 fusA-1 SO0229: tufA - translation elongation factor Tu (NCBI ptt file), at 244,057 to 245,241 tufA Position (kb) 241 242 243 244Strain fitness (log2 ratio) -1 0 1at 244.953 kb on - strand, within tufA

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Per-strain Table

Position Strand Gene LocusTag Fraction minimal media, aerobic, 0G configuration
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244,953 - tufA SO0229 0.76 -0.7

Or see this region's nucleotide sequence