Experiment: minimal media, aerobic, 0G configuration
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0208.1 and SO0211 are separated by 22 nucleotides SO0211 and murB are separated by 277 nucleotides murB and birA overlap by 8 nucleotides birA and panK are separated by 2 nucleotides
SO0208.1: SO0208.1 - putative transposase (NCBI ptt file), at 222,590 to 222,898
SO0208.1
SO0211: SO0211 - ISSod10, transposase OrfA (NCBI ptt file), at 222,921 to 223,361
SO0211
SO0213: murB - UDP-N-acetylenolpyruvoylglucosamine reductase (NCBI ptt file), at 223,639 to 224,664
murB
SO0214: birA - birA bifunctional protein (NCBI ptt file), at 224,657 to 225,616
birA
SO0215: panK - pantothenate kinase (NCBI ptt file), at 225,619 to 226,569
panK
Position (kb) 223
224
225 Strain fitness (log2 ratio) -1
0
1
2 at 222.879 kb on - strand at 222.938 kb on + strand at 223.002 kb on - strand, within SO0211 at 223.045 kb on - strand, within SO0211 at 223.076 kb on - strand, within SO0211 at 223.098 kb on - strand, within SO0211 at 223.100 kb on + strand, within SO0211 at 223.100 kb on + strand, within SO0211 at 223.108 kb on - strand, within SO0211 at 223.170 kb on + strand, within SO0211 at 223.170 kb on + strand, within SO0211 at 223.170 kb on + strand, within SO0211 at 223.224 kb on + strand, within SO0211 at 223.243 kb on - strand, within SO0211 at 223.289 kb on + strand, within SO0211 at 223.289 kb on + strand, within SO0211 at 223.297 kb on - strand, within SO0211 at 223.422 kb on + strand at 223.424 kb on - strand at 223.465 kb on + strand at 223.578 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction minimal media, aerobic, 0G configuration remove 222,879 - +1.0 222,938 + +0.7 223,002 - SO0211 0.18 +0.3 223,045 - SO0211 0.28 +0.7 223,076 - SO0211 0.35 -0.5 223,098 - SO0211 0.40 +0.6 223,100 + SO0211 0.41 +0.1 223,100 + SO0211 0.41 +1.6 223,108 - SO0211 0.42 +1.4 223,170 + SO0211 0.56 -0.2 223,170 + SO0211 0.56 -0.5 223,170 + SO0211 0.56 +0.6 223,224 + SO0211 0.69 -0.2 223,243 - SO0211 0.73 +0.2 223,289 + SO0211 0.83 +0.1 223,289 + SO0211 0.83 +2.4 223,297 - SO0211 0.85 -1.7 223,422 + +0.2 223,424 - +0.1 223,465 + +0.5 223,578 - +0.2
Or see this region's nucleotide sequence