Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS27330

Experiment: Azelaic (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRR42_RS27325 and RR42_RS27330 are separated by 202 nucleotidesRR42_RS27330 and RR42_RS27335 are separated by 83 nucleotides RR42_RS27325: RR42_RS27325 - aldehyde dehydrogenase, at 1,483,286 to 1,484,017 _RS27325 RR42_RS27330: RR42_RS27330 - ornithine cyclodeaminase, at 1,484,220 to 1,485,152 _RS27330 RR42_RS27335: RR42_RS27335 - ornithine cyclodeaminase, at 1,485,236 to 1,485,988 _RS27335 Position (kb) 1484 1485 1486Strain fitness (log2 ratio) -2 -1 0 1at 1484.062 kb on + strandat 1484.062 kb on + strandat 1484.062 kb on + strandat 1484.160 kb on - strandat 1484.160 kb on - strandat 1484.211 kb on + strandat 1484.212 kb on - strandat 1484.212 kb on - strandat 1484.212 kb on - strandat 1484.312 kb on - strandat 1484.460 kb on + strand, within RR42_RS27330at 1484.460 kb on + strand, within RR42_RS27330at 1484.699 kb on - strand, within RR42_RS27330at 1484.953 kb on + strand, within RR42_RS27330at 1484.954 kb on - strand, within RR42_RS27330at 1484.954 kb on - strand, within RR42_RS27330at 1484.954 kb on - strand, within RR42_RS27330at 1484.954 kb on - strand, within RR42_RS27330at 1485.035 kb on + strand, within RR42_RS27330at 1485.035 kb on + strand, within RR42_RS27330at 1485.143 kb on + strandat 1485.144 kb on - strandat 1485.158 kb on - strandat 1485.158 kb on - strandat 1485.169 kb on + strandat 1485.190 kb on + strandat 1485.190 kb on + strandat 1485.191 kb on - strandat 1485.191 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Azelaic (C)
remove
1,484,062 + -0.7
1,484,062 + -1.1
1,484,062 + -0.3
1,484,160 - -0.1
1,484,160 - -1.0
1,484,211 + -1.0
1,484,212 - -0.6
1,484,212 - +1.2
1,484,212 - -0.5
1,484,312 - -1.8
1,484,460 + RR42_RS27330 0.26 +0.3
1,484,460 + RR42_RS27330 0.26 +1.6
1,484,699 - RR42_RS27330 0.51 -0.1
1,484,953 + RR42_RS27330 0.79 -0.1
1,484,954 - RR42_RS27330 0.79 +1.0
1,484,954 - RR42_RS27330 0.79 -0.2
1,484,954 - RR42_RS27330 0.79 +0.2
1,484,954 - RR42_RS27330 0.79 +0.4
1,485,035 + RR42_RS27330 0.87 -0.6
1,485,035 + RR42_RS27330 0.87 -0.6
1,485,143 + +0.2
1,485,144 - -0.3
1,485,158 - +0.3
1,485,158 - +1.6
1,485,169 + +0.2
1,485,190 + +0.1
1,485,190 + +0.0
1,485,191 - -0.0
1,485,191 - -0.6

Or see this region's nucleotide sequence