Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS26175

Experiment: Azelaic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS26170 and RR42_RS26175 are separated by 108 nucleotidesRR42_RS26175 and RR42_RS26180 are separated by 29 nucleotides RR42_RS26170: RR42_RS26170 - rod shape-determining protein MreB, at 1,228,595 to 1,229,638 _RS26170 RR42_RS26175: RR42_RS26175 - gamma-glutamyltransferase, at 1,229,747 to 1,231,612 _RS26175 RR42_RS26180: RR42_RS26180 - hypothetical protein, at 1,231,642 to 1,232,490 _RS26180 Position (kb) 1229 1230 1231 1232Strain fitness (log2 ratio) -3 -2 -1 0 1at 1228.794 kb on + strand, within RR42_RS26170at 1229.012 kb on + strand, within RR42_RS26170at 1229.012 kb on + strand, within RR42_RS26170at 1229.144 kb on + strand, within RR42_RS26170at 1229.145 kb on - strand, within RR42_RS26170at 1229.145 kb on - strand, within RR42_RS26170at 1229.145 kb on - strand, within RR42_RS26170at 1229.198 kb on + strand, within RR42_RS26170at 1229.198 kb on + strand, within RR42_RS26170at 1229.199 kb on - strand, within RR42_RS26170at 1229.199 kb on - strand, within RR42_RS26170at 1229.213 kb on + strand, within RR42_RS26170at 1229.213 kb on + strand, within RR42_RS26170at 1229.630 kb on + strandat 1230.027 kb on + strand, within RR42_RS26175at 1230.028 kb on - strand, within RR42_RS26175at 1230.028 kb on - strand, within RR42_RS26175at 1230.243 kb on + strand, within RR42_RS26175at 1230.244 kb on - strand, within RR42_RS26175at 1230.426 kb on + strand, within RR42_RS26175at 1230.483 kb on + strand, within RR42_RS26175at 1230.483 kb on + strand, within RR42_RS26175at 1230.484 kb on - strand, within RR42_RS26175at 1230.484 kb on - strand, within RR42_RS26175at 1230.501 kb on + strand, within RR42_RS26175at 1230.604 kb on - strand, within RR42_RS26175at 1230.708 kb on + strand, within RR42_RS26175at 1230.829 kb on + strand, within RR42_RS26175at 1230.831 kb on + strand, within RR42_RS26175at 1230.832 kb on - strand, within RR42_RS26175at 1230.832 kb on - strand, within RR42_RS26175at 1230.832 kb on - strand, within RR42_RS26175at 1230.832 kb on - strand, within RR42_RS26175at 1230.993 kb on + strand, within RR42_RS26175at 1230.994 kb on - strand, within RR42_RS26175at 1231.228 kb on - strand, within RR42_RS26175at 1231.254 kb on + strand, within RR42_RS26175at 1231.254 kb on + strand, within RR42_RS26175at 1231.255 kb on - strand, within RR42_RS26175at 1231.255 kb on - strand, within RR42_RS26175at 1231.255 kb on - strand, within RR42_RS26175at 1231.255 kb on - strand, within RR42_RS26175at 1231.255 kb on - strand, within RR42_RS26175at 1231.422 kb on + strand, within RR42_RS26175at 1231.422 kb on + strand, within RR42_RS26175at 1231.547 kb on + strandat 1231.547 kb on + strandat 1231.548 kb on - strandat 1231.643 kb on + strandat 1231.808 kb on - strand, within RR42_RS26180at 1231.985 kb on - strand, within RR42_RS26180at 1232.352 kb on - strand, within RR42_RS26180at 1232.421 kb on - strandat 1232.443 kb on + strandat 1232.547 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Azelaic (C)
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1,228,794 + RR42_RS26170 0.19 +0.6
1,229,012 + RR42_RS26170 0.40 +0.2
1,229,012 + RR42_RS26170 0.40 -2.8
1,229,144 + RR42_RS26170 0.53 -0.5
1,229,145 - RR42_RS26170 0.53 +0.6
1,229,145 - RR42_RS26170 0.53 +0.4
1,229,145 - RR42_RS26170 0.53 +0.5
1,229,198 + RR42_RS26170 0.58 +0.4
1,229,198 + RR42_RS26170 0.58 +0.0
1,229,199 - RR42_RS26170 0.58 -0.5
1,229,199 - RR42_RS26170 0.58 -2.8
1,229,213 + RR42_RS26170 0.59 +0.4
1,229,213 + RR42_RS26170 0.59 +0.2
1,229,630 + -0.1
1,230,027 + RR42_RS26175 0.15 -1.5
1,230,028 - RR42_RS26175 0.15 +1.7
1,230,028 - RR42_RS26175 0.15 -0.4
1,230,243 + RR42_RS26175 0.27 -1.0
1,230,244 - RR42_RS26175 0.27 +0.2
1,230,426 + RR42_RS26175 0.36 -1.2
1,230,483 + RR42_RS26175 0.39 -0.3
1,230,483 + RR42_RS26175 0.39 +0.0
1,230,484 - RR42_RS26175 0.39 -0.6
1,230,484 - RR42_RS26175 0.39 +0.5
1,230,501 + RR42_RS26175 0.40 +0.1
1,230,604 - RR42_RS26175 0.46 +0.0
1,230,708 + RR42_RS26175 0.52 -0.1
1,230,829 + RR42_RS26175 0.58 -0.3
1,230,831 + RR42_RS26175 0.58 -2.4
1,230,832 - RR42_RS26175 0.58 -1.8
1,230,832 - RR42_RS26175 0.58 +0.5
1,230,832 - RR42_RS26175 0.58 +1.7
1,230,832 - RR42_RS26175 0.58 -1.1
1,230,993 + RR42_RS26175 0.67 +0.0
1,230,994 - RR42_RS26175 0.67 -2.5
1,231,228 - RR42_RS26175 0.79 -0.2
1,231,254 + RR42_RS26175 0.81 -0.4
1,231,254 + RR42_RS26175 0.81 -0.1
1,231,255 - RR42_RS26175 0.81 -0.8
1,231,255 - RR42_RS26175 0.81 -0.7
1,231,255 - RR42_RS26175 0.81 -0.3
1,231,255 - RR42_RS26175 0.81 +0.3
1,231,255 - RR42_RS26175 0.81 +0.4
1,231,422 + RR42_RS26175 0.90 +0.5
1,231,422 + RR42_RS26175 0.90 -0.2
1,231,547 + -1.0
1,231,547 + +0.3
1,231,548 - -0.5
1,231,643 + -0.1
1,231,808 - RR42_RS26180 0.20 -0.4
1,231,985 - RR42_RS26180 0.40 +0.0
1,232,352 - RR42_RS26180 0.84 +0.1
1,232,421 - +0.2
1,232,443 + -0.1
1,232,547 - -1.0

Or see this region's nucleotide sequence