Experiment: Azelaic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS24825 and RR42_RS24830 are separated by 35 nucleotides RR42_RS24830 and RR42_RS24835 are separated by 34 nucleotides
RR42_RS24825: RR42_RS24825 - carnitine dehydratase, at 907,023 to 908,177
_RS24825
RR42_RS24830: RR42_RS24830 - 3-oxoacyl-ACP reductase, at 908,213 to 909,013
_RS24830
RR42_RS24835: RR42_RS24835 - carnitine dehydratase, at 909,048 to 910,385
_RS24835
Position (kb) 908
909
910 Strain fitness (log2 ratio) -2
-1
0
1 at 907.219 kb on + strand, within RR42_RS24825 at 907.368 kb on + strand, within RR42_RS24825 at 907.368 kb on + strand, within RR42_RS24825 at 907.434 kb on + strand, within RR42_RS24825 at 907.434 kb on + strand, within RR42_RS24825 at 907.434 kb on + strand, within RR42_RS24825 at 907.435 kb on - strand, within RR42_RS24825 at 907.435 kb on - strand, within RR42_RS24825 at 907.435 kb on - strand, within RR42_RS24825 at 907.533 kb on + strand, within RR42_RS24825 at 907.534 kb on - strand, within RR42_RS24825 at 907.644 kb on + strand, within RR42_RS24825 at 907.645 kb on - strand, within RR42_RS24825 at 907.645 kb on - strand, within RR42_RS24825 at 907.716 kb on + strand, within RR42_RS24825 at 907.716 kb on + strand, within RR42_RS24825 at 907.716 kb on + strand, within RR42_RS24825 at 907.717 kb on - strand, within RR42_RS24825 at 907.717 kb on - strand, within RR42_RS24825 at 907.726 kb on - strand, within RR42_RS24825 at 907.787 kb on + strand, within RR42_RS24825 at 907.787 kb on + strand, within RR42_RS24825 at 908.262 kb on + strand at 908.263 kb on - strand at 908.306 kb on - strand, within RR42_RS24830 at 908.355 kb on + strand, within RR42_RS24830 at 908.355 kb on + strand, within RR42_RS24830 at 908.356 kb on - strand, within RR42_RS24830 at 908.356 kb on - strand, within RR42_RS24830 at 909.125 kb on + strand at 909.126 kb on - strand at 909.126 kb on - strand at 909.371 kb on + strand, within RR42_RS24835 at 909.372 kb on - strand, within RR42_RS24835 at 909.589 kb on + strand, within RR42_RS24835 at 909.590 kb on - strand, within RR42_RS24835 at 909.590 kb on - strand, within RR42_RS24835 at 909.679 kb on + strand, within RR42_RS24835 at 909.680 kb on - strand, within RR42_RS24835 at 909.748 kb on + strand, within RR42_RS24835 at 909.749 kb on - strand, within RR42_RS24835 at 909.749 kb on - strand, within RR42_RS24835 at 909.782 kb on - strand, within RR42_RS24835 at 909.836 kb on - strand, within RR42_RS24835 at 909.884 kb on - strand, within RR42_RS24835 at 909.884 kb on - strand, within RR42_RS24835 at 909.919 kb on + strand, within RR42_RS24835 at 909.920 kb on - strand, within RR42_RS24835
Per-strain Table
Position Strand Gene LocusTag Fraction Azelaic (C) remove 907,219 + RR42_RS24825 0.17 -0.9 907,368 + RR42_RS24825 0.30 -2.1 907,368 + RR42_RS24825 0.30 -0.1 907,434 + RR42_RS24825 0.36 +0.9 907,434 + RR42_RS24825 0.36 -0.6 907,434 + RR42_RS24825 0.36 -0.3 907,435 - RR42_RS24825 0.36 +0.4 907,435 - RR42_RS24825 0.36 -1.8 907,435 - RR42_RS24825 0.36 +0.3 907,533 + RR42_RS24825 0.44 -0.3 907,534 - RR42_RS24825 0.44 +0.9 907,644 + RR42_RS24825 0.54 -0.1 907,645 - RR42_RS24825 0.54 +0.6 907,645 - RR42_RS24825 0.54 -0.2 907,716 + RR42_RS24825 0.60 -1.1 907,716 + RR42_RS24825 0.60 +0.8 907,716 + RR42_RS24825 0.60 +0.5 907,717 - RR42_RS24825 0.60 -0.6 907,717 - RR42_RS24825 0.60 -1.8 907,726 - RR42_RS24825 0.61 -0.1 907,787 + RR42_RS24825 0.66 -2.0 907,787 + RR42_RS24825 0.66 -0.5 908,262 + +0.5 908,263 - +0.0 908,306 - RR42_RS24830 0.12 +0.8 908,355 + RR42_RS24830 0.18 +0.4 908,355 + RR42_RS24830 0.18 +0.2 908,356 - RR42_RS24830 0.18 +0.5 908,356 - RR42_RS24830 0.18 -0.9 909,125 + -1.4 909,126 - -0.8 909,126 - -0.3 909,371 + RR42_RS24835 0.24 +0.5 909,372 - RR42_RS24835 0.24 +0.3 909,589 + RR42_RS24835 0.40 +0.7 909,590 - RR42_RS24835 0.41 -0.4 909,590 - RR42_RS24835 0.41 +0.1 909,679 + RR42_RS24835 0.47 +0.4 909,680 - RR42_RS24835 0.47 +0.2 909,748 + RR42_RS24835 0.52 -0.2 909,749 - RR42_RS24835 0.52 -1.2 909,749 - RR42_RS24835 0.52 -0.1 909,782 - RR42_RS24835 0.55 -0.6 909,836 - RR42_RS24835 0.59 -0.1 909,884 - RR42_RS24835 0.62 -0.1 909,884 - RR42_RS24835 0.62 -1.4 909,919 + RR42_RS24835 0.65 -0.4 909,920 - RR42_RS24835 0.65 +0.8
Or see this region's nucleotide sequence