Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS22440

Experiment: Azelaic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS22435 and RR42_RS22440 are separated by 32 nucleotidesRR42_RS22440 and RR42_RS22445 overlap by 4 nucleotides RR42_RS22435: RR42_RS22435 - membrane protein, at 369,277 to 370,284 _RS22435 RR42_RS22440: RR42_RS22440 - ADP-glucose pyrophosphorylase, at 370,317 to 371,081 _RS22440 RR42_RS22445: RR42_RS22445 - phosphoenolpyruvate phosphomutase, at 371,078 to 372,784 _RS22445 Position (kb) 370 371 372Strain fitness (log2 ratio) -3 -2 -1 0 1at 369.448 kb on + strand, within RR42_RS22435at 369.448 kb on + strand, within RR42_RS22435at 369.449 kb on - strand, within RR42_RS22435at 369.449 kb on - strand, within RR42_RS22435at 369.449 kb on - strand, within RR42_RS22435at 369.449 kb on - strand, within RR42_RS22435at 369.449 kb on - strand, within RR42_RS22435at 369.764 kb on + strand, within RR42_RS22435at 369.765 kb on - strand, within RR42_RS22435at 369.765 kb on - strand, within RR42_RS22435at 369.765 kb on - strand, within RR42_RS22435at 369.765 kb on - strand, within RR42_RS22435at 369.770 kb on + strand, within RR42_RS22435at 369.770 kb on + strand, within RR42_RS22435at 369.770 kb on + strand, within RR42_RS22435at 369.771 kb on - strand, within RR42_RS22435at 369.781 kb on + strand, within RR42_RS22435at 369.782 kb on - strand, within RR42_RS22435at 369.836 kb on + strand, within RR42_RS22435at 369.907 kb on + strand, within RR42_RS22435at 369.907 kb on + strand, within RR42_RS22435at 369.907 kb on + strand, within RR42_RS22435at 369.908 kb on - strand, within RR42_RS22435at 369.908 kb on - strand, within RR42_RS22435at 370.216 kb on + strandat 370.216 kb on + strandat 370.220 kb on + strandat 370.346 kb on - strandat 370.650 kb on + strand, within RR42_RS22440at 370.651 kb on - strand, within RR42_RS22440at 370.651 kb on - strand, within RR42_RS22440at 370.806 kb on + strand, within RR42_RS22440at 370.807 kb on - strand, within RR42_RS22440at 370.887 kb on + strand, within RR42_RS22440at 370.887 kb on + strand, within RR42_RS22440at 370.888 kb on - strand, within RR42_RS22440at 370.960 kb on + strand, within RR42_RS22440at 370.960 kb on + strand, within RR42_RS22440at 370.961 kb on - strand, within RR42_RS22440at 370.961 kb on - strand, within RR42_RS22440at 370.961 kb on - strand, within RR42_RS22440at 370.961 kb on - strand, within RR42_RS22440at 370.961 kb on - strand, within RR42_RS22440at 371.302 kb on + strand, within RR42_RS22445at 371.750 kb on + strand, within RR42_RS22445at 371.750 kb on + strand, within RR42_RS22445at 371.750 kb on + strand, within RR42_RS22445at 371.750 kb on + strand, within RR42_RS22445at 371.750 kb on + strand, within RR42_RS22445at 371.750 kb on + strand, within RR42_RS22445at 371.751 kb on - strand, within RR42_RS22445at 371.753 kb on + strand, within RR42_RS22445at 371.753 kb on + strand, within RR42_RS22445at 371.753 kb on + strand, within RR42_RS22445at 371.753 kb on + strand, within RR42_RS22445at 371.753 kb on + strand, within RR42_RS22445at 371.754 kb on - strand, within RR42_RS22445at 371.754 kb on - strand, within RR42_RS22445at 371.754 kb on - strand, within RR42_RS22445at 371.754 kb on - strand, within RR42_RS22445at 371.946 kb on - strand, within RR42_RS22445at 371.946 kb on - strand, within RR42_RS22445at 371.966 kb on + strand, within RR42_RS22445at 371.966 kb on + strand, within RR42_RS22445at 371.966 kb on + strand, within RR42_RS22445

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Per-strain Table

Position Strand Gene LocusTag Fraction Azelaic (C)
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369,448 + RR42_RS22435 0.17 +0.1
369,448 + RR42_RS22435 0.17 -0.2
369,449 - RR42_RS22435 0.17 +0.3
369,449 - RR42_RS22435 0.17 +1.3
369,449 - RR42_RS22435 0.17 -0.1
369,449 - RR42_RS22435 0.17 +0.9
369,449 - RR42_RS22435 0.17 -1.1
369,764 + RR42_RS22435 0.48 +0.5
369,765 - RR42_RS22435 0.48 -0.7
369,765 - RR42_RS22435 0.48 -1.0
369,765 - RR42_RS22435 0.48 -0.7
369,765 - RR42_RS22435 0.48 +0.1
369,770 + RR42_RS22435 0.49 -0.6
369,770 + RR42_RS22435 0.49 +0.4
369,770 + RR42_RS22435 0.49 +0.2
369,771 - RR42_RS22435 0.49 -0.5
369,781 + RR42_RS22435 0.50 +0.6
369,782 - RR42_RS22435 0.50 -0.4
369,836 + RR42_RS22435 0.55 +0.1
369,907 + RR42_RS22435 0.62 +0.4
369,907 + RR42_RS22435 0.62 -0.3
369,907 + RR42_RS22435 0.62 -3.5
369,908 - RR42_RS22435 0.63 +0.6
369,908 - RR42_RS22435 0.63 +0.0
370,216 + -0.9
370,216 + -0.0
370,220 + -0.0
370,346 - +0.2
370,650 + RR42_RS22440 0.44 -1.0
370,651 - RR42_RS22440 0.44 +0.7
370,651 - RR42_RS22440 0.44 +1.0
370,806 + RR42_RS22440 0.64 +0.0
370,807 - RR42_RS22440 0.64 +1.0
370,887 + RR42_RS22440 0.75 -0.2
370,887 + RR42_RS22440 0.75 +0.3
370,888 - RR42_RS22440 0.75 +0.8
370,960 + RR42_RS22440 0.84 -0.1
370,960 + RR42_RS22440 0.84 +0.4
370,961 - RR42_RS22440 0.84 +1.7
370,961 - RR42_RS22440 0.84 -0.7
370,961 - RR42_RS22440 0.84 +0.3
370,961 - RR42_RS22440 0.84 +1.0
370,961 - RR42_RS22440 0.84 +1.1
371,302 + RR42_RS22445 0.13 -0.5
371,750 + RR42_RS22445 0.39 +0.6
371,750 + RR42_RS22445 0.39 +0.2
371,750 + RR42_RS22445 0.39 +0.1
371,750 + RR42_RS22445 0.39 -0.2
371,750 + RR42_RS22445 0.39 +1.0
371,750 + RR42_RS22445 0.39 +0.6
371,751 - RR42_RS22445 0.39 +1.3
371,753 + RR42_RS22445 0.40 +0.1
371,753 + RR42_RS22445 0.40 +0.1
371,753 + RR42_RS22445 0.40 +0.5
371,753 + RR42_RS22445 0.40 +0.8
371,753 + RR42_RS22445 0.40 +0.0
371,754 - RR42_RS22445 0.40 +0.4
371,754 - RR42_RS22445 0.40 -0.0
371,754 - RR42_RS22445 0.40 +1.0
371,754 - RR42_RS22445 0.40 +1.7
371,946 - RR42_RS22445 0.51 -0.3
371,946 - RR42_RS22445 0.51 -0.4
371,966 + RR42_RS22445 0.52 +1.6
371,966 + RR42_RS22445 0.52 +0.1
371,966 + RR42_RS22445 0.52 -0.4

Or see this region's nucleotide sequence