Experiment: Azelaic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS08250 and RR42_RS08255 are separated by 52 nucleotides RR42_RS08255 and RR42_RS08260 are separated by 3 nucleotides RR42_RS08260 and RR42_RS08265 are separated by 9 nucleotides RR42_RS08265 and RR42_RS08270 overlap by 1 nucleotides
RR42_RS08250: RR42_RS08250 - coat protein, at 1,751,483 to 1,752,649
_RS08250
RR42_RS08255: RR42_RS08255 - hypothetical protein, at 1,752,702 to 1,753,112
_RS08255
RR42_RS08260: RR42_RS08260 - hypothetical protein, at 1,753,116 to 1,753,511
_RS08260
RR42_RS08265: RR42_RS08265 - hypothetical protein, at 1,753,521 to 1,753,964
_RS08265
RR42_RS08270: RR42_RS08270 - hypothetical protein, at 1,753,964 to 1,754,614
_RS08270
Position (kb) 1753
1754 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1752.293 kb on + strand, within RR42_RS08250 at 1752.293 kb on + strand, within RR42_RS08250 at 1752.293 kb on + strand, within RR42_RS08250 at 1752.293 kb on + strand, within RR42_RS08250 at 1752.293 kb on + strand, within RR42_RS08250 at 1752.293 kb on + strand, within RR42_RS08250 at 1752.293 kb on + strand, within RR42_RS08250 at 1752.293 kb on + strand, within RR42_RS08250 at 1752.294 kb on - strand, within RR42_RS08250 at 1752.294 kb on - strand, within RR42_RS08250 at 1752.294 kb on - strand, within RR42_RS08250 at 1752.581 kb on + strand at 1753.153 kb on - strand at 1753.197 kb on + strand, within RR42_RS08260 at 1753.212 kb on + strand, within RR42_RS08260 at 1753.295 kb on + strand, within RR42_RS08260 at 1753.491 kb on - strand at 1753.608 kb on + strand, within RR42_RS08265 at 1753.806 kb on + strand, within RR42_RS08265 at 1753.994 kb on + strand at 1753.994 kb on + strand at 1753.995 kb on - strand at 1754.030 kb on + strand, within RR42_RS08270 at 1754.036 kb on + strand, within RR42_RS08270 at 1754.036 kb on + strand, within RR42_RS08270 at 1754.037 kb on - strand, within RR42_RS08270 at 1754.081 kb on - strand, within RR42_RS08270 at 1754.127 kb on - strand, within RR42_RS08270 at 1754.201 kb on + strand, within RR42_RS08270 at 1754.202 kb on - strand, within RR42_RS08270 at 1754.334 kb on - strand, within RR42_RS08270 at 1754.334 kb on - strand, within RR42_RS08270 at 1754.334 kb on - strand, within RR42_RS08270
Per-strain Table
Position Strand Gene LocusTag Fraction Azelaic (C) remove 1,752,293 + RR42_RS08250 0.69 -0.3 1,752,293 + RR42_RS08250 0.69 +0.2 1,752,293 + RR42_RS08250 0.69 +0.3 1,752,293 + RR42_RS08250 0.69 +1.3 1,752,293 + RR42_RS08250 0.69 -1.4 1,752,293 + RR42_RS08250 0.69 +0.3 1,752,293 + RR42_RS08250 0.69 +2.6 1,752,293 + RR42_RS08250 0.69 +0.4 1,752,294 - RR42_RS08250 0.69 +1.2 1,752,294 - RR42_RS08250 0.69 -1.9 1,752,294 - RR42_RS08250 0.69 +0.5 1,752,581 + -1.6 1,753,153 - -0.9 1,753,197 + RR42_RS08260 0.20 -2.2 1,753,212 + RR42_RS08260 0.24 -1.4 1,753,295 + RR42_RS08260 0.45 -2.0 1,753,491 - -1.4 1,753,608 + RR42_RS08265 0.20 +0.6 1,753,806 + RR42_RS08265 0.64 -2.7 1,753,994 + -1.1 1,753,994 + -0.1 1,753,995 - -0.3 1,754,030 + RR42_RS08270 0.10 -0.4 1,754,036 + RR42_RS08270 0.11 -2.9 1,754,036 + RR42_RS08270 0.11 +0.1 1,754,037 - RR42_RS08270 0.11 -0.3 1,754,081 - RR42_RS08270 0.18 +0.3 1,754,127 - RR42_RS08270 0.25 +1.9 1,754,201 + RR42_RS08270 0.36 +1.2 1,754,202 - RR42_RS08270 0.37 +0.3 1,754,334 - RR42_RS08270 0.57 +0.9 1,754,334 - RR42_RS08270 0.57 +0.3 1,754,334 - RR42_RS08270 0.57 -0.4
Or see this region's nucleotide sequence