Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS08245

Experiment: Azelaic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS08240 and RR42_RS08245 are separated by 134 nucleotidesRR42_RS08245 and RR42_RS08250 are separated by 135 nucleotides RR42_RS08240: RR42_RS08240 - DNA-binding protein, at 1,749,030 to 1,750,415 _RS08240 RR42_RS08245: RR42_RS08245 - hypothetical protein, at 1,750,550 to 1,751,347 _RS08245 RR42_RS08250: RR42_RS08250 - coat protein, at 1,751,483 to 1,752,649 _RS08250 Position (kb) 1750 1751 1752Strain fitness (log2 ratio) -2 -1 0 1 2at 1749.738 kb on + strand, within RR42_RS08240at 1749.739 kb on - strand, within RR42_RS08240at 1750.607 kb on + strandat 1750.608 kb on - strandat 1751.078 kb on + strand, within RR42_RS08245at 1751.256 kb on - strand, within RR42_RS08245at 1751.722 kb on + strand, within RR42_RS08250at 1751.722 kb on + strand, within RR42_RS08250at 1751.789 kb on + strand, within RR42_RS08250at 1751.873 kb on + strand, within RR42_RS08250at 1752.293 kb on + strand, within RR42_RS08250at 1752.293 kb on + strand, within RR42_RS08250at 1752.293 kb on + strand, within RR42_RS08250at 1752.293 kb on + strand, within RR42_RS08250at 1752.293 kb on + strand, within RR42_RS08250at 1752.293 kb on + strand, within RR42_RS08250at 1752.293 kb on + strand, within RR42_RS08250at 1752.293 kb on + strand, within RR42_RS08250at 1752.294 kb on - strand, within RR42_RS08250at 1752.294 kb on - strand, within RR42_RS08250at 1752.294 kb on - strand, within RR42_RS08250

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Per-strain Table

Position Strand Gene LocusTag Fraction Azelaic (C)
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1,749,738 + RR42_RS08240 0.51 -0.7
1,749,739 - RR42_RS08240 0.51 +0.4
1,750,607 + +1.2
1,750,608 - -1.4
1,751,078 + RR42_RS08245 0.66 +0.0
1,751,256 - RR42_RS08245 0.88 +0.4
1,751,722 + RR42_RS08250 0.20 -0.4
1,751,722 + RR42_RS08250 0.20 +0.2
1,751,789 + RR42_RS08250 0.26 +1.4
1,751,873 + RR42_RS08250 0.33 -0.3
1,752,293 + RR42_RS08250 0.69 -0.3
1,752,293 + RR42_RS08250 0.69 +0.2
1,752,293 + RR42_RS08250 0.69 +0.3
1,752,293 + RR42_RS08250 0.69 +1.3
1,752,293 + RR42_RS08250 0.69 -1.4
1,752,293 + RR42_RS08250 0.69 +0.3
1,752,293 + RR42_RS08250 0.69 +2.6
1,752,293 + RR42_RS08250 0.69 +0.4
1,752,294 - RR42_RS08250 0.69 +1.2
1,752,294 - RR42_RS08250 0.69 -1.9
1,752,294 - RR42_RS08250 0.69 +0.5

Or see this region's nucleotide sequence