Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS02685

Experiment: Azelaic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS02675 and RR42_RS02680 are separated by 116 nucleotidesRR42_RS02680 and RR42_RS02685 are separated by 89 nucleotidesRR42_RS02685 and RR42_RS02690 are separated by 26 nucleotidesRR42_RS02690 and RR42_RS02695 are separated by 127 nucleotides RR42_RS02675: RR42_RS02675 - D-tyrosyl-tRNA(Tyr) deacylase, at 598,131 to 598,631 _RS02675 RR42_RS02680: RR42_RS02680 - phospholipid-binding protein, at 598,748 to 599,407 _RS02680 RR42_RS02685: RR42_RS02685 - phosphoglycerate mutase, at 599,497 to 600,171 _RS02685 RR42_RS02690: RR42_RS02690 - membrane protein, at 600,198 to 600,923 _RS02690 RR42_RS02695: RR42_RS02695 - lipoprotein, at 601,051 to 601,635 _RS02695 Position (kb) 599 600 601Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 598.613 kb on - strandat 598.659 kb on + strandat 598.659 kb on + strandat 598.660 kb on - strandat 599.018 kb on - strand, within RR42_RS02680at 599.018 kb on - strand, within RR42_RS02680at 599.147 kb on + strand, within RR42_RS02680at 599.189 kb on + strand, within RR42_RS02680at 599.190 kb on - strand, within RR42_RS02680at 599.190 kb on - strand, within RR42_RS02680at 599.190 kb on - strand, within RR42_RS02680at 599.193 kb on - strand, within RR42_RS02680at 599.243 kb on + strand, within RR42_RS02680at 599.243 kb on + strand, within RR42_RS02680at 599.244 kb on - strand, within RR42_RS02680at 599.244 kb on - strand, within RR42_RS02680at 599.244 kb on - strand, within RR42_RS02680at 599.286 kb on + strand, within RR42_RS02680at 599.366 kb on + strandat 599.366 kb on + strandat 599.366 kb on + strandat 599.366 kb on + strandat 599.367 kb on - strandat 599.367 kb on - strandat 599.367 kb on - strandat 599.367 kb on - strandat 599.367 kb on - strandat 599.367 kb on - strandat 599.367 kb on - strandat 599.405 kb on + strandat 599.405 kb on + strandat 599.406 kb on - strandat 599.466 kb on - strandat 599.684 kb on - strand, within RR42_RS02685at 599.782 kb on + strand, within RR42_RS02685at 599.807 kb on - strand, within RR42_RS02685at 599.870 kb on - strand, within RR42_RS02685at 600.002 kb on - strand, within RR42_RS02685at 600.199 kb on + strandat 600.200 kb on - strandat 600.200 kb on - strandat 600.241 kb on + strandat 600.241 kb on + strandat 600.241 kb on + strandat 600.242 kb on - strandat 600.245 kb on - strandat 600.286 kb on + strand, within RR42_RS02690at 600.286 kb on + strand, within RR42_RS02690at 600.287 kb on - strand, within RR42_RS02690at 600.287 kb on - strand, within RR42_RS02690at 600.287 kb on - strand, within RR42_RS02690at 600.287 kb on - strand, within RR42_RS02690at 600.331 kb on + strand, within RR42_RS02690at 600.331 kb on + strand, within RR42_RS02690at 600.331 kb on + strand, within RR42_RS02690at 600.331 kb on + strand, within RR42_RS02690at 600.332 kb on - strand, within RR42_RS02690at 600.332 kb on - strand, within RR42_RS02690at 600.332 kb on - strand, within RR42_RS02690at 600.332 kb on - strand, within RR42_RS02690at 600.394 kb on + strand, within RR42_RS02690at 600.394 kb on + strand, within RR42_RS02690at 600.394 kb on + strand, within RR42_RS02690at 600.394 kb on + strand, within RR42_RS02690at 600.394 kb on + strand, within RR42_RS02690at 600.454 kb on - strand, within RR42_RS02690at 600.496 kb on + strand, within RR42_RS02690at 600.496 kb on + strand, within RR42_RS02690at 600.496 kb on + strand, within RR42_RS02690at 600.496 kb on + strand, within RR42_RS02690at 600.496 kb on + strand, within RR42_RS02690at 600.496 kb on + strand, within RR42_RS02690at 600.496 kb on + strand, within RR42_RS02690at 600.496 kb on + strand, within RR42_RS02690at 600.496 kb on + strand, within RR42_RS02690at 600.496 kb on + strand, within RR42_RS02690at 600.496 kb on + strand, within RR42_RS02690at 600.496 kb on + strand, within RR42_RS02690at 600.496 kb on + strand, within RR42_RS02690at 600.496 kb on + strand, within RR42_RS02690at 600.496 kb on + strand, within RR42_RS02690at 600.496 kb on + strand, within RR42_RS02690at 600.496 kb on + strand, within RR42_RS02690at 600.497 kb on - strand, within RR42_RS02690at 600.497 kb on - strand, within RR42_RS02690at 600.497 kb on - strand, within RR42_RS02690at 600.497 kb on - strand, within RR42_RS02690at 600.497 kb on - strand, within RR42_RS02690at 600.497 kb on - strand, within RR42_RS02690at 600.497 kb on - strand, within RR42_RS02690at 600.497 kb on - strand, within RR42_RS02690at 600.497 kb on - strand, within RR42_RS02690at 600.557 kb on + strand, within RR42_RS02690at 600.557 kb on + strand, within RR42_RS02690at 600.557 kb on + strand, within RR42_RS02690at 600.557 kb on + strand, within RR42_RS02690at 600.589 kb on + strand, within RR42_RS02690at 600.698 kb on - strand, within RR42_RS02690at 600.703 kb on + strand, within RR42_RS02690at 600.703 kb on + strand, within RR42_RS02690at 600.871 kb on + strandat 600.871 kb on + strandat 600.871 kb on + strandat 600.871 kb on + strandat 600.874 kb on + strandat 600.875 kb on - strandat 600.879 kb on + strandat 600.880 kb on + strandat 600.881 kb on - strandat 600.881 kb on - strandat 600.881 kb on - strandat 600.955 kb on + strandat 600.956 kb on - strandat 600.956 kb on - strandat 600.956 kb on - strandat 600.992 kb on + strandat 601.052 kb on + strandat 601.053 kb on - strandat 601.156 kb on - strand, within RR42_RS02695at 601.156 kb on - strand, within RR42_RS02695

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Per-strain Table

Position Strand Gene LocusTag Fraction Azelaic (C)
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598,613 - +0.8
598,659 + +1.1
598,659 + -0.5
598,660 - -0.5
599,018 - RR42_RS02680 0.41 +0.6
599,018 - RR42_RS02680 0.41 +0.4
599,147 + RR42_RS02680 0.60 +0.1
599,189 + RR42_RS02680 0.67 -0.6
599,190 - RR42_RS02680 0.67 -0.4
599,190 - RR42_RS02680 0.67 -0.9
599,190 - RR42_RS02680 0.67 -3.1
599,193 - RR42_RS02680 0.67 -0.1
599,243 + RR42_RS02680 0.75 -0.9
599,243 + RR42_RS02680 0.75 +0.3
599,244 - RR42_RS02680 0.75 +0.5
599,244 - RR42_RS02680 0.75 -0.7
599,244 - RR42_RS02680 0.75 -2.3
599,286 + RR42_RS02680 0.82 +0.6
599,366 + -0.7
599,366 + -0.1
599,366 + +1.0
599,366 + +0.1
599,367 - -0.1
599,367 - +0.4
599,367 - -0.6
599,367 - -1.2
599,367 - -0.6
599,367 - +0.4
599,367 - -0.5
599,405 + -0.4
599,405 + -0.3
599,406 - +0.1
599,466 - +0.8
599,684 - RR42_RS02685 0.28 +0.9
599,782 + RR42_RS02685 0.42 +2.3
599,807 - RR42_RS02685 0.46 +0.4
599,870 - RR42_RS02685 0.55 +0.8
600,002 - RR42_RS02685 0.75 -0.1
600,199 + +1.3
600,200 - -1.8
600,200 - -0.7
600,241 + -0.7
600,241 + +0.0
600,241 + -0.6
600,242 - +0.4
600,245 - +0.3
600,286 + RR42_RS02690 0.12 -0.4
600,286 + RR42_RS02690 0.12 -0.1
600,287 - RR42_RS02690 0.12 +1.4
600,287 - RR42_RS02690 0.12 -0.2
600,287 - RR42_RS02690 0.12 -0.3
600,287 - RR42_RS02690 0.12 +0.4
600,331 + RR42_RS02690 0.18 +3.1
600,331 + RR42_RS02690 0.18 +0.7
600,331 + RR42_RS02690 0.18 -0.1
600,331 + RR42_RS02690 0.18 +0.1
600,332 - RR42_RS02690 0.18 -0.4
600,332 - RR42_RS02690 0.18 -1.2
600,332 - RR42_RS02690 0.18 +0.8
600,332 - RR42_RS02690 0.18 +0.3
600,394 + RR42_RS02690 0.27 +0.4
600,394 + RR42_RS02690 0.27 -2.1
600,394 + RR42_RS02690 0.27 -0.8
600,394 + RR42_RS02690 0.27 +1.1
600,394 + RR42_RS02690 0.27 +0.5
600,454 - RR42_RS02690 0.35 +0.0
600,496 + RR42_RS02690 0.41 -0.1
600,496 + RR42_RS02690 0.41 -0.7
600,496 + RR42_RS02690 0.41 -0.6
600,496 + RR42_RS02690 0.41 -0.6
600,496 + RR42_RS02690 0.41 +0.1
600,496 + RR42_RS02690 0.41 -0.8
600,496 + RR42_RS02690 0.41 +1.1
600,496 + RR42_RS02690 0.41 -0.1
600,496 + RR42_RS02690 0.41 +0.9
600,496 + RR42_RS02690 0.41 -1.8
600,496 + RR42_RS02690 0.41 -0.5
600,496 + RR42_RS02690 0.41 +0.2
600,496 + RR42_RS02690 0.41 -0.1
600,496 + RR42_RS02690 0.41 -1.1
600,496 + RR42_RS02690 0.41 -0.5
600,496 + RR42_RS02690 0.41 -0.5
600,496 + RR42_RS02690 0.41 -0.4
600,497 - RR42_RS02690 0.41 +0.3
600,497 - RR42_RS02690 0.41 -0.5
600,497 - RR42_RS02690 0.41 +0.5
600,497 - RR42_RS02690 0.41 +0.0
600,497 - RR42_RS02690 0.41 -0.5
600,497 - RR42_RS02690 0.41 -0.6
600,497 - RR42_RS02690 0.41 -0.7
600,497 - RR42_RS02690 0.41 -0.4
600,497 - RR42_RS02690 0.41 -1.1
600,557 + RR42_RS02690 0.49 +0.1
600,557 + RR42_RS02690 0.49 +0.1
600,557 + RR42_RS02690 0.49 +0.8
600,557 + RR42_RS02690 0.49 +0.1
600,589 + RR42_RS02690 0.54 +0.9
600,698 - RR42_RS02690 0.69 +0.7
600,703 + RR42_RS02690 0.70 +0.2
600,703 + RR42_RS02690 0.70 -0.0
600,871 + -0.1
600,871 + +0.6
600,871 + +1.0
600,871 + -0.5
600,874 + -0.5
600,875 - +0.5
600,879 + -0.2
600,880 + -0.6
600,881 - +0.6
600,881 - -0.2
600,881 - +0.5
600,955 + +0.4
600,956 - +0.5
600,956 - +3.4
600,956 - -0.2
600,992 + -1.2
601,052 + +1.7
601,053 - +0.9
601,156 - RR42_RS02695 0.18 -1.9
601,156 - RR42_RS02695 0.18 +0.7

Or see this region's nucleotide sequence