Experiment: Azelaic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS02350 and RR42_RS02355 are separated by 3 nucleotides RR42_RS02355 and RR42_RS02360 are separated by 127 nucleotides RR42_RS02360 and RR42_RS02365 are separated by 15 nucleotides
RR42_RS02350: RR42_RS02350 - VWA domain-containing protein, at 526,404 to 527,699
_RS02350
RR42_RS02355: RR42_RS02355 - ATPase, at 527,703 to 528,599
_RS02355
RR42_RS02360: RR42_RS02360 - carbon monoxide dehydrogenase, at 528,727 to 529,527
_RS02360
RR42_RS02365: RR42_RS02365 - carbon monoxide dehydrogenase, at 529,543 to 531,924
_RS02365
Position (kb) 527
528
529 Strain fitness (log2 ratio) -2
-1
0
1
2 at 526.957 kb on + strand, within RR42_RS02350 at 526.958 kb on - strand, within RR42_RS02350 at 526.958 kb on - strand, within RR42_RS02350 at 526.958 kb on - strand, within RR42_RS02350 at 526.975 kb on + strand, within RR42_RS02350 at 527.044 kb on + strand, within RR42_RS02350 at 527.539 kb on + strand, within RR42_RS02350 at 527.539 kb on + strand, within RR42_RS02350 at 527.539 kb on + strand, within RR42_RS02350 at 527.540 kb on - strand, within RR42_RS02350 at 527.776 kb on + strand at 527.777 kb on - strand at 528.004 kb on + strand, within RR42_RS02355 at 528.020 kb on - strand, within RR42_RS02355 at 528.283 kb on + strand, within RR42_RS02355 at 528.284 kb on - strand, within RR42_RS02355 at 528.352 kb on + strand, within RR42_RS02355 at 528.364 kb on + strand, within RR42_RS02355 at 528.394 kb on + strand, within RR42_RS02355 at 528.395 kb on - strand, within RR42_RS02355 at 528.514 kb on + strand at 528.547 kb on + strand at 528.547 kb on + strand at 529.010 kb on + strand, within RR42_RS02360 at 529.010 kb on + strand, within RR42_RS02360 at 529.011 kb on - strand, within RR42_RS02360 at 529.079 kb on + strand, within RR42_RS02360 at 529.376 kb on - strand, within RR42_RS02360 at 529.408 kb on + strand, within RR42_RS02360 at 529.408 kb on + strand, within RR42_RS02360 at 529.448 kb on + strand at 529.523 kb on + strand at 529.523 kb on + strand at 529.523 kb on + strand at 529.524 kb on - strand at 529.524 kb on - strand at 529.524 kb on - strand at 529.549 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Azelaic (C) remove 526,957 + RR42_RS02350 0.43 +0.4 526,958 - RR42_RS02350 0.43 -0.0 526,958 - RR42_RS02350 0.43 +2.6 526,958 - RR42_RS02350 0.43 -0.1 526,975 + RR42_RS02350 0.44 +0.4 527,044 + RR42_RS02350 0.49 +0.1 527,539 + RR42_RS02350 0.88 +0.3 527,539 + RR42_RS02350 0.88 -1.0 527,539 + RR42_RS02350 0.88 +0.7 527,540 - RR42_RS02350 0.88 -0.1 527,776 + +0.3 527,777 - +0.4 528,004 + RR42_RS02355 0.34 -0.0 528,020 - RR42_RS02355 0.35 -0.7 528,283 + RR42_RS02355 0.65 -0.2 528,284 - RR42_RS02355 0.65 -1.2 528,352 + RR42_RS02355 0.72 -0.0 528,364 + RR42_RS02355 0.74 -1.2 528,394 + RR42_RS02355 0.77 +0.4 528,395 - RR42_RS02355 0.77 -0.7 528,514 + -0.1 528,547 + -0.6 528,547 + -0.3 529,010 + RR42_RS02360 0.35 -1.2 529,010 + RR42_RS02360 0.35 +0.4 529,011 - RR42_RS02360 0.35 -0.7 529,079 + RR42_RS02360 0.44 -0.0 529,376 - RR42_RS02360 0.81 -1.8 529,408 + RR42_RS02360 0.85 -0.2 529,408 + RR42_RS02360 0.85 +1.3 529,448 + +1.2 529,523 + -0.3 529,523 + +0.3 529,523 + +0.1 529,524 - +0.7 529,524 - +0.2 529,524 - +0.3 529,549 - -0.1
Or see this region's nucleotide sequence