Experiment: Azelaic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS01320 and RR42_RS01325 are separated by 0 nucleotides RR42_RS01325 and RR42_RS01330 are separated by 20 nucleotides RR42_RS01330 and RR42_RS01335 are separated by 222 nucleotides
RR42_RS01320: RR42_RS01320 - ATPase AAA, at 299,929 to 300,705
_RS01320
RR42_RS01325: RR42_RS01325 - hypothetical protein, at 300,706 to 301,023
_RS01325
RR42_RS01330: RR42_RS01330 - Fis family transcriptional regulator, at 301,044 to 302,765
_RS01330
RR42_RS01335: RR42_RS01335 - methylmalonyl-CoA carboxyltransferase, at 302,988 to 304,535
_RS01335
Position (kb) 301
302
303 Strain fitness (log2 ratio) -2
-1
0
1
2 at 300.124 kb on + strand, within RR42_RS01320 at 300.124 kb on + strand, within RR42_RS01320 at 300.125 kb on - strand, within RR42_RS01320 at 300.193 kb on + strand, within RR42_RS01320 at 300.193 kb on + strand, within RR42_RS01320 at 300.559 kb on + strand, within RR42_RS01320 at 300.559 kb on + strand, within RR42_RS01320 at 300.559 kb on + strand, within RR42_RS01320 at 300.559 kb on + strand, within RR42_RS01320 at 300.560 kb on - strand, within RR42_RS01320 at 300.596 kb on - strand, within RR42_RS01320 at 300.859 kb on + strand, within RR42_RS01325 at 300.860 kb on - strand, within RR42_RS01325 at 300.890 kb on - strand, within RR42_RS01325 at 300.890 kb on - strand, within RR42_RS01325 at 300.916 kb on + strand, within RR42_RS01325 at 300.916 kb on + strand, within RR42_RS01325 at 300.917 kb on - strand, within RR42_RS01325 at 300.986 kb on - strand, within RR42_RS01325 at 301.075 kb on + strand at 301.075 kb on + strand at 301.075 kb on + strand at 301.576 kb on + strand, within RR42_RS01330 at 301.577 kb on - strand, within RR42_RS01330 at 301.691 kb on + strand, within RR42_RS01330 at 301.691 kb on + strand, within RR42_RS01330 at 301.692 kb on - strand, within RR42_RS01330 at 301.692 kb on - strand, within RR42_RS01330 at 302.304 kb on + strand, within RR42_RS01330 at 302.740 kb on - strand at 302.740 kb on - strand at 302.767 kb on - strand at 302.873 kb on + strand at 302.873 kb on + strand at 302.874 kb on - strand at 302.938 kb on + strand at 302.939 kb on - strand at 302.951 kb on - strand at 302.963 kb on + strand at 303.172 kb on - strand, within RR42_RS01335 at 303.420 kb on + strand, within RR42_RS01335 at 303.547 kb on - strand, within RR42_RS01335 at 303.619 kb on + strand, within RR42_RS01335 at 303.620 kb on - strand, within RR42_RS01335 at 303.656 kb on + strand, within RR42_RS01335 at 303.733 kb on - strand, within RR42_RS01335
Per-strain Table
Position Strand Gene LocusTag Fraction Azelaic (C) remove 300,124 + RR42_RS01320 0.25 -0.5 300,124 + RR42_RS01320 0.25 -0.2 300,125 - RR42_RS01320 0.25 +1.3 300,193 + RR42_RS01320 0.34 +1.3 300,193 + RR42_RS01320 0.34 -0.3 300,559 + RR42_RS01320 0.81 -0.2 300,559 + RR42_RS01320 0.81 +1.0 300,559 + RR42_RS01320 0.81 -1.0 300,559 + RR42_RS01320 0.81 -0.1 300,560 - RR42_RS01320 0.81 -0.9 300,596 - RR42_RS01320 0.86 +2.1 300,859 + RR42_RS01325 0.48 -0.1 300,860 - RR42_RS01325 0.48 -0.4 300,890 - RR42_RS01325 0.58 -0.7 300,890 - RR42_RS01325 0.58 +1.2 300,916 + RR42_RS01325 0.66 -0.1 300,916 + RR42_RS01325 0.66 -0.6 300,917 - RR42_RS01325 0.66 -0.4 300,986 - RR42_RS01325 0.88 +0.5 301,075 + -0.3 301,075 + -2.4 301,075 + +0.9 301,576 + RR42_RS01330 0.31 -1.0 301,577 - RR42_RS01330 0.31 +0.1 301,691 + RR42_RS01330 0.38 +1.9 301,691 + RR42_RS01330 0.38 -1.3 301,692 - RR42_RS01330 0.38 -0.0 301,692 - RR42_RS01330 0.38 +0.4 302,304 + RR42_RS01330 0.73 -0.7 302,740 - +1.3 302,740 - -0.3 302,767 - -0.7 302,873 + -0.3 302,873 + +1.0 302,874 - +0.6 302,938 + -0.7 302,939 - -0.2 302,951 - -0.5 302,963 + -1.7 303,172 - RR42_RS01335 0.12 +0.8 303,420 + RR42_RS01335 0.28 -0.2 303,547 - RR42_RS01335 0.36 +0.3 303,619 + RR42_RS01335 0.41 -2.4 303,620 - RR42_RS01335 0.41 +0.5 303,656 + RR42_RS01335 0.43 -1.8 303,733 - RR42_RS01335 0.48 -0.8
Or see this region's nucleotide sequence