Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS23725

Experiment: Plant=Tomato cv. Bonney Best; Treatment=None; Sample=xylem local; Collection=Direct; Time=3 dpi

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRALBFv3_RS06150 and RALBFv3_RS06155 are separated by 198 nucleotidesRALBFv3_RS06155 and RALBFv3_RS23725 are separated by 37 nucleotidesRALBFv3_RS23725 and RALBFv3_RS06165 are separated by 278 nucleotides RALBFv3_RS06150: RALBFv3_RS06150 - GTPase ObgE, at 1,368,891 to 1,369,991 _RS06150 RALBFv3_RS06155: RALBFv3_RS06155 - 50S ribosomal protein L27, at 1,370,190 to 1,370,450 _RS06155 RALBFv3_RS23725: RALBFv3_RS23725 - 50S ribosomal protein L21, at 1,370,488 to 1,370,799 _RS23725 RALBFv3_RS06165: RALBFv3_RS06165 - octaprenyl diphosphate synthase, at 1,371,078 to 1,372,046 _RS06165 Position (kb) 1370 1371Strain fitness (log2 ratio) -1 0 1at 1370.889 kb on - strandat 1370.994 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato cv. Bonney Best; Treatment=None; Sample=xylem local; Collection=Direct; Time=3 dpi
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1,370,889 - -0.2
1,370,994 + -0.6

Or see this region's nucleotide sequence