Experiment: Plant=Tomato cv. Bonney Best; Treatment=None; Sample=xylem local; Collection=Direct; Time=3 dpi
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS18835 and RALBFv3_RS24415 overlap by 4 nucleotides RALBFv3_RS24415 and RALBFv3_RS18840 overlap by 36 nucleotides RALBFv3_RS18840 and RALBFv3_RS18845 are separated by 30 nucleotides
RALBFv3_RS18835: RALBFv3_RS18835 - hypothetical protein, at 770,122 to 771,189
_RS18835
RALBFv3_RS24415: RALBFv3_RS24415 - hypothetical protein, at 771,186 to 771,470
_RS24415
RALBFv3_RS18840: RALBFv3_RS18840 - IMP dehydrogenase, at 771,435 to 774,872
_RS18840
RALBFv3_RS18845: RALBFv3_RS18845 - hypothetical protein, at 774,903 to 777,512
_RS18845
Position (kb) 771
772
773
774
775 Strain fitness (log2 ratio) -2
-1
0
1
2 at 770.502 kb on - strand, within RALBFv3_RS18835 at 770.600 kb on + strand, within RALBFv3_RS18835 at 770.600 kb on + strand, within RALBFv3_RS18835 at 770.601 kb on - strand, within RALBFv3_RS18835 at 770.601 kb on - strand, within RALBFv3_RS18835 at 770.643 kb on - strand, within RALBFv3_RS18835 at 770.838 kb on + strand, within RALBFv3_RS18835 at 770.840 kb on + strand, within RALBFv3_RS18835 at 770.880 kb on - strand, within RALBFv3_RS18835 at 770.880 kb on - strand, within RALBFv3_RS18835 at 770.997 kb on - strand, within RALBFv3_RS18835 at 771.440 kb on + strand at 771.440 kb on + strand at 771.619 kb on - strand at 771.619 kb on - strand at 771.696 kb on + strand at 771.697 kb on - strand at 772.045 kb on - strand, within RALBFv3_RS18840 at 772.045 kb on - strand, within RALBFv3_RS18840 at 772.137 kb on + strand, within RALBFv3_RS18840 at 772.138 kb on - strand, within RALBFv3_RS18840 at 772.336 kb on - strand, within RALBFv3_RS18840 at 772.336 kb on - strand, within RALBFv3_RS18840 at 772.507 kb on - strand, within RALBFv3_RS18840 at 772.507 kb on - strand, within RALBFv3_RS18840 at 772.584 kb on + strand, within RALBFv3_RS18840 at 772.624 kb on - strand, within RALBFv3_RS18840 at 772.696 kb on - strand, within RALBFv3_RS18840 at 772.791 kb on + strand, within RALBFv3_RS18840 at 772.791 kb on + strand, within RALBFv3_RS18840 at 772.792 kb on - strand, within RALBFv3_RS18840 at 772.794 kb on + strand, within RALBFv3_RS18840 at 772.794 kb on + strand, within RALBFv3_RS18840 at 772.795 kb on - strand, within RALBFv3_RS18840 at 772.795 kb on - strand, within RALBFv3_RS18840 at 772.917 kb on + strand, within RALBFv3_RS18840 at 772.918 kb on - strand, within RALBFv3_RS18840 at 773.157 kb on + strand, within RALBFv3_RS18840 at 773.158 kb on - strand, within RALBFv3_RS18840 at 773.394 kb on - strand, within RALBFv3_RS18840 at 773.410 kb on - strand, within RALBFv3_RS18840 at 773.595 kb on + strand, within RALBFv3_RS18840 at 773.596 kb on - strand, within RALBFv3_RS18840 at 773.601 kb on + strand, within RALBFv3_RS18840 at 773.601 kb on + strand, within RALBFv3_RS18840 at 773.601 kb on + strand, within RALBFv3_RS18840 at 773.601 kb on + strand, within RALBFv3_RS18840 at 773.623 kb on - strand, within RALBFv3_RS18840 at 773.623 kb on - strand, within RALBFv3_RS18840 at 773.760 kb on + strand, within RALBFv3_RS18840 at 773.787 kb on + strand, within RALBFv3_RS18840 at 773.862 kb on + strand, within RALBFv3_RS18840 at 774.177 kb on + strand, within RALBFv3_RS18840 at 774.177 kb on + strand, within RALBFv3_RS18840 at 774.445 kb on - strand, within RALBFv3_RS18840 at 774.693 kb on + strand at 774.724 kb on - strand at 774.724 kb on - strand at 774.747 kb on + strand at 774.748 kb on - strand at 775.137 kb on + strand at 775.137 kb on + strand at 775.146 kb on + strand at 775.348 kb on - strand, within RALBFv3_RS18845 at 775.716 kb on + strand, within RALBFv3_RS18845 at 775.800 kb on + strand, within RALBFv3_RS18845 at 775.801 kb on - strand, within RALBFv3_RS18845
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato cv. Bonney Best; Treatment=None; Sample=xylem local; Collection=Direct; Time=3 dpi remove 770,502 - RALBFv3_RS18835 0.36 +0.4 770,600 + RALBFv3_RS18835 0.45 -0.4 770,600 + RALBFv3_RS18835 0.45 -1.8 770,601 - RALBFv3_RS18835 0.45 -0.4 770,601 - RALBFv3_RS18835 0.45 +0.2 770,643 - RALBFv3_RS18835 0.49 -0.2 770,838 + RALBFv3_RS18835 0.67 +0.2 770,840 + RALBFv3_RS18835 0.67 -1.4 770,880 - RALBFv3_RS18835 0.71 -0.8 770,880 - RALBFv3_RS18835 0.71 -0.6 770,997 - RALBFv3_RS18835 0.82 +0.2 771,440 + +0.3 771,440 + -0.8 771,619 - +0.8 771,619 - -1.1 771,696 + -0.2 771,697 - +0.9 772,045 - RALBFv3_RS18840 0.18 -1.7 772,045 - RALBFv3_RS18840 0.18 +2.3 772,137 + RALBFv3_RS18840 0.20 +1.7 772,138 - RALBFv3_RS18840 0.20 +0.2 772,336 - RALBFv3_RS18840 0.26 -0.2 772,336 - RALBFv3_RS18840 0.26 -1.2 772,507 - RALBFv3_RS18840 0.31 -0.8 772,507 - RALBFv3_RS18840 0.31 -1.2 772,584 + RALBFv3_RS18840 0.33 -0.1 772,624 - RALBFv3_RS18840 0.35 -1.0 772,696 - RALBFv3_RS18840 0.37 -0.2 772,791 + RALBFv3_RS18840 0.39 +0.1 772,791 + RALBFv3_RS18840 0.39 -0.4 772,792 - RALBFv3_RS18840 0.39 -0.0 772,794 + RALBFv3_RS18840 0.40 +1.4 772,794 + RALBFv3_RS18840 0.40 -0.2 772,795 - RALBFv3_RS18840 0.40 +1.1 772,795 - RALBFv3_RS18840 0.40 +0.5 772,917 + RALBFv3_RS18840 0.43 -0.7 772,918 - RALBFv3_RS18840 0.43 -1.6 773,157 + RALBFv3_RS18840 0.50 -0.3 773,158 - RALBFv3_RS18840 0.50 +0.2 773,394 - RALBFv3_RS18840 0.57 +2.0 773,410 - RALBFv3_RS18840 0.57 +1.8 773,595 + RALBFv3_RS18840 0.63 +0.8 773,596 - RALBFv3_RS18840 0.63 +0.8 773,601 + RALBFv3_RS18840 0.63 -0.9 773,601 + RALBFv3_RS18840 0.63 -0.1 773,601 + RALBFv3_RS18840 0.63 -0.6 773,601 + RALBFv3_RS18840 0.63 +0.2 773,623 - RALBFv3_RS18840 0.64 -0.8 773,623 - RALBFv3_RS18840 0.64 +2.4 773,760 + RALBFv3_RS18840 0.68 -0.4 773,787 + RALBFv3_RS18840 0.68 +0.1 773,862 + RALBFv3_RS18840 0.71 -1.2 774,177 + RALBFv3_RS18840 0.80 +0.8 774,177 + RALBFv3_RS18840 0.80 +0.2 774,445 - RALBFv3_RS18840 0.88 -0.1 774,693 + -1.1 774,724 - -0.5 774,724 - -0.8 774,747 + -0.4 774,748 - -0.1 775,137 + -0.5 775,137 + -2.2 775,146 + +0.8 775,348 - RALBFv3_RS18845 0.17 -0.2 775,716 + RALBFv3_RS18845 0.31 -1.4 775,800 + RALBFv3_RS18845 0.34 +0.8 775,801 - RALBFv3_RS18845 0.34 -0.2
Or see this region's nucleotide sequence