Experiment: Plant=Tomato cv. Bonney Best; Treatment=None; Sample=xylem local; Collection=Direct; Time=3 dpi
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS17390 and RALBFv3_RS17395 are separated by 81 nucleotides RALBFv3_RS17395 and RALBFv3_RS17400 are separated by 164 nucleotides RALBFv3_RS17400 and RALBFv3_RS17405 are separated by 477 nucleotides
RALBFv3_RS17390: RALBFv3_RS17390 - chemotaxis protein CheA, at 392,674 to 394,848
_RS17390
RALBFv3_RS17395: RALBFv3_RS17395 - chemotaxis protein CheW, at 394,930 to 395,421
_RS17395
RALBFv3_RS17400: RALBFv3_RS17400 - membrane protein, at 395,586 to 397,403
_RS17400
RALBFv3_RS17405: RALBFv3_RS17405 - chemotaxis protein CheR, at 397,881 to 398,759
_RS17405
Position (kb) 395
396
397
398 Strain fitness (log2 ratio) -2
-1
0
1
2 at 394.645 kb on + strand at 394.645 kb on + strand at 394.646 kb on - strand at 394.646 kb on - strand at 394.646 kb on - strand at 394.887 kb on + strand at 394.887 kb on + strand at 394.888 kb on - strand at 394.888 kb on - strand at 394.888 kb on - strand at 394.888 kb on - strand at 394.888 kb on - strand at 394.891 kb on + strand at 394.892 kb on - strand at 394.900 kb on + strand at 394.900 kb on + strand at 394.900 kb on + strand at 394.901 kb on - strand at 394.978 kb on + strand at 394.978 kb on + strand at 394.978 kb on + strand at 394.978 kb on + strand at 394.978 kb on + strand at 394.979 kb on - strand at 394.979 kb on - strand at 395.009 kb on - strand, within RALBFv3_RS17395 at 395.168 kb on - strand, within RALBFv3_RS17395 at 395.176 kb on + strand, within RALBFv3_RS17395 at 395.176 kb on + strand, within RALBFv3_RS17395 at 395.176 kb on + strand, within RALBFv3_RS17395 at 395.177 kb on - strand, within RALBFv3_RS17395 at 395.311 kb on + strand, within RALBFv3_RS17395 at 395.312 kb on - strand, within RALBFv3_RS17395 at 395.312 kb on - strand, within RALBFv3_RS17395 at 395.312 kb on - strand, within RALBFv3_RS17395 at 395.312 kb on - strand, within RALBFv3_RS17395 at 395.312 kb on - strand, within RALBFv3_RS17395 at 395.476 kb on + strand at 395.477 kb on - strand at 395.477 kb on - strand at 395.477 kb on - strand at 395.554 kb on + strand at 395.556 kb on + strand at 395.556 kb on + strand at 395.556 kb on + strand at 395.556 kb on + strand at 395.556 kb on + strand at 395.556 kb on + strand at 395.556 kb on + strand at 395.556 kb on + strand at 395.557 kb on - strand at 395.557 kb on - strand at 395.557 kb on - strand at 395.558 kb on - strand at 395.598 kb on - strand at 395.696 kb on + strand at 395.715 kb on + strand at 395.715 kb on + strand at 395.715 kb on + strand at 395.715 kb on + strand at 395.716 kb on - strand at 395.716 kb on - strand at 395.716 kb on - strand at 396.051 kb on + strand, within RALBFv3_RS17400 at 396.118 kb on - strand, within RALBFv3_RS17400 at 396.118 kb on - strand, within RALBFv3_RS17400 at 396.154 kb on + strand, within RALBFv3_RS17400 at 396.155 kb on - strand, within RALBFv3_RS17400 at 397.409 kb on + strand at 397.409 kb on + strand at 397.409 kb on + strand at 397.409 kb on + strand at 397.409 kb on + strand at 397.409 kb on + strand at 397.409 kb on + strand at 397.409 kb on + strand at 397.409 kb on + strand at 397.409 kb on + strand at 397.409 kb on + strand at 397.410 kb on - strand at 397.410 kb on - strand at 397.410 kb on - strand at 397.410 kb on - strand at 397.410 kb on - strand at 397.410 kb on - strand at 397.410 kb on - strand at 397.410 kb on - strand at 397.410 kb on - strand at 397.410 kb on - strand at 397.410 kb on - strand at 397.410 kb on - strand at 397.649 kb on + strand at 397.653 kb on - strand at 397.771 kb on + strand at 397.772 kb on - strand at 397.792 kb on - strand at 397.866 kb on - strand at 397.872 kb on + strand at 397.873 kb on - strand at 397.975 kb on - strand, within RALBFv3_RS17405 at 397.975 kb on - strand, within RALBFv3_RS17405 at 398.022 kb on + strand, within RALBFv3_RS17405 at 398.023 kb on - strand, within RALBFv3_RS17405 at 398.023 kb on - strand, within RALBFv3_RS17405 at 398.262 kb on + strand, within RALBFv3_RS17405 at 398.262 kb on + strand, within RALBFv3_RS17405
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato cv. Bonney Best; Treatment=None; Sample=xylem local; Collection=Direct; Time=3 dpi remove 394,645 + -1.0 394,645 + +0.0 394,646 - +0.0 394,646 - -0.6 394,646 - -1.0 394,887 + +0.0 394,887 + -0.4 394,888 - -1.6 394,888 - -0.8 394,888 - +1.0 394,888 - +2.0 394,888 - -0.2 394,891 + +1.1 394,892 - -0.6 394,900 + +2.0 394,900 + -0.3 394,900 + +0.2 394,901 - +0.4 394,978 + +1.0 394,978 + +0.0 394,978 + +0.1 394,978 + -0.7 394,978 + -1.0 394,979 - -0.1 394,979 - +1.2 395,009 - RALBFv3_RS17395 0.16 +2.3 395,168 - RALBFv3_RS17395 0.48 +0.9 395,176 + RALBFv3_RS17395 0.50 -1.0 395,176 + RALBFv3_RS17395 0.50 -0.0 395,176 + RALBFv3_RS17395 0.50 -0.8 395,177 - RALBFv3_RS17395 0.50 -1.6 395,311 + RALBFv3_RS17395 0.77 +1.0 395,312 - RALBFv3_RS17395 0.78 -1.6 395,312 - RALBFv3_RS17395 0.78 +0.4 395,312 - RALBFv3_RS17395 0.78 +1.0 395,312 - RALBFv3_RS17395 0.78 +0.4 395,312 - RALBFv3_RS17395 0.78 -0.7 395,476 + -1.2 395,477 - -0.3 395,477 - -2.2 395,477 - -0.3 395,554 + +0.8 395,556 + +2.1 395,556 + -1.3 395,556 + +1.8 395,556 + +0.0 395,556 + -0.3 395,556 + -2.1 395,556 + +0.3 395,556 + -0.5 395,557 - +0.6 395,557 - +0.2 395,557 - +0.0 395,558 - +0.5 395,598 - +1.4 395,696 + -0.6 395,715 + -1.6 395,715 + -0.7 395,715 + +0.3 395,715 + -1.1 395,716 - +0.3 395,716 - +1.0 395,716 - -1.8 396,051 + RALBFv3_RS17400 0.26 +0.5 396,118 - RALBFv3_RS17400 0.29 +0.6 396,118 - RALBFv3_RS17400 0.29 -0.9 396,154 + RALBFv3_RS17400 0.31 -0.4 396,155 - RALBFv3_RS17400 0.31 -2.3 397,409 + -0.3 397,409 + -1.3 397,409 + -2.0 397,409 + -0.8 397,409 + -0.1 397,409 + +0.4 397,409 + -0.5 397,409 + -0.5 397,409 + +0.6 397,409 + +0.2 397,409 + +1.3 397,410 - +0.0 397,410 - -0.9 397,410 - -0.1 397,410 - +0.0 397,410 - -1.3 397,410 - +1.3 397,410 - -0.2 397,410 - -0.4 397,410 - +0.6 397,410 - -0.6 397,410 - +0.0 397,410 - +1.0 397,649 + -0.0 397,653 - +1.0 397,771 + +1.0 397,772 - -0.8 397,792 - -0.6 397,866 - -0.2 397,872 + -1.3 397,873 - -0.9 397,975 - RALBFv3_RS17405 0.11 -0.7 397,975 - RALBFv3_RS17405 0.11 +0.2 398,022 + RALBFv3_RS17405 0.16 -1.6 398,023 - RALBFv3_RS17405 0.16 -0.3 398,023 - RALBFv3_RS17405 0.16 -1.3 398,262 + RALBFv3_RS17405 0.43 +0.1 398,262 + RALBFv3_RS17405 0.43 -1.1
Or see this region's nucleotide sequence