Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS15315

Experiment: Plant=Tomato cv. Bonney Best; Treatment=None; Sample=xylem local; Collection=Direct; Time=3 dpi

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRALBFv3_RS15310 and RALBFv3_RS15315 are separated by 15 nucleotidesRALBFv3_RS15315 and RALBFv3_RS15320 are separated by 78 nucleotidesRALBFv3_RS15320 and RALBFv3_RS15325 are separated by 52 nucleotides RALBFv3_RS15310: RALBFv3_RS15310 - FtsH protease activity modulator HflK, at 3,333,659 to 3,335,038 _RS15310 RALBFv3_RS15315: RALBFv3_RS15315 - protease modulator HflC, at 3,335,054 to 3,335,968 _RS15315 RALBFv3_RS15320: RALBFv3_RS15320 - DUF2065 domain-containing protein, at 3,336,047 to 3,336,247 _RS15320 RALBFv3_RS15325: RALBFv3_RS15325 - ATP phosphoribosyltransferase regulatory subunit, at 3,336,300 to 3,337,460 _RS15325 Position (kb) 3335 3336Strain fitness (log2 ratio) -3 -2 -1 0 1at 3334.301 kb on + strand, within RALBFv3_RS15310at 3334.598 kb on + strand, within RALBFv3_RS15310at 3335.357 kb on + strand, within RALBFv3_RS15315at 3335.970 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato cv. Bonney Best; Treatment=None; Sample=xylem local; Collection=Direct; Time=3 dpi
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3,334,301 + RALBFv3_RS15310 0.47 -3.4
3,334,598 + RALBFv3_RS15310 0.68 -2.9
3,335,357 + RALBFv3_RS15315 0.33 +0.1
3,335,970 - +0.8

Or see this region's nucleotide sequence