Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS09950

Experiment: Plant=Tomato cv. Bonney Best; Treatment=None; Sample=xylem local; Collection=Direct; Time=3 dpi

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Tomato cv. Bonney Best; Treatment=None; Sample=xylem local; Collection=Direct; Time=3 dpi
2,215,678	+		RALBFv3_RS09945	0.75	-2.1
2,215,679	-		RALBFv3_RS09945	0.75	+0.1
2,215,679	-		RALBFv3_RS09945	0.75	+0.4
2,215,916	-				-1.0
2,215,916	-				-0.6
2,215,916	-				+0.2
2,216,131	-				-0.9
2,216,171	-				+0.6
2,216,171	-				-0.7
2,216,245	+				-0.8
2,216,246	-				-0.2
2,216,516	-		RALBFv3_RS09950	0.10	-0.0
2,216,608	+		RALBFv3_RS09950	0.12	+0.2
2,216,608	+		RALBFv3_RS09950	0.12	-0.2
2,216,608	+		RALBFv3_RS09950	0.12	+0.8
2,216,609	-		RALBFv3_RS09950	0.12	+1.0
2,216,617	+		RALBFv3_RS09950	0.12	-1.3
2,216,632	+		RALBFv3_RS09950	0.12	+1.4
2,216,632	+		RALBFv3_RS09950	0.12	+0.4
2,216,633	-		RALBFv3_RS09950	0.12	-2.1
2,216,633	-		RALBFv3_RS09950	0.12	+1.4
2,217,124	+		RALBFv3_RS09950	0.22	+0.4
2,217,125	-		RALBFv3_RS09950	0.22	-0.8
2,217,125	-		RALBFv3_RS09950	0.22	+0.1
2,217,280	+		RALBFv3_RS09950	0.25	-1.2
2,217,280	+		RALBFv3_RS09950	0.25	-0.6
2,217,281	-		RALBFv3_RS09950	0.25	-0.2
2,217,281	-		RALBFv3_RS09950	0.25	+0.6
2,217,281	-		RALBFv3_RS09950	0.25	+0.3
2,217,334	+		RALBFv3_RS09950	0.26	-0.5
2,217,335	-		RALBFv3_RS09950	0.26	-0.2
2,217,647	-		RALBFv3_RS09950	0.33	+1.4
2,217,647	-		RALBFv3_RS09950	0.33	-0.2
2,217,647	-		RALBFv3_RS09950	0.33	+0.4
2,217,647	-		RALBFv3_RS09950	0.33	-0.8
2,217,844	+		RALBFv3_RS09950	0.36	+1.4
2,217,985	+		RALBFv3_RS09950	0.39	-1.4
2,217,986	-		RALBFv3_RS09950	0.39	-1.1
2,217,991	+		RALBFv3_RS09950	0.39	+0.7
2,217,991	+		RALBFv3_RS09950	0.39	-0.3
2,217,992	-		RALBFv3_RS09950	0.39	+0.0
2,218,106	-		RALBFv3_RS09950	0.42	+1.8
2,218,246	+		RALBFv3_RS09950	0.44	+0.2
2,218,246	+		RALBFv3_RS09950	0.44	+0.1
2,218,247	-		RALBFv3_RS09950	0.44	+1.6
2,218,247	-		RALBFv3_RS09950	0.44	+0.7
2,218,247	-		RALBFv3_RS09950	0.44	-1.1
2,218,247	-		RALBFv3_RS09950	0.44	+0.9
2,218,252	+		RALBFv3_RS09950	0.45	-0.4
2,218,252	+		RALBFv3_RS09950	0.45	+0.2
2,218,252	+		RALBFv3_RS09950	0.45	-0.0
2,218,253	-		RALBFv3_RS09950	0.45	-0.5
2,218,253	-		RALBFv3_RS09950	0.45	-1.0
2,218,253	-		RALBFv3_RS09950	0.45	-0.1
2,218,291	+		RALBFv3_RS09950	0.45	+0.8
2,218,292	-		RALBFv3_RS09950	0.45	-0.2
2,218,366	+		RALBFv3_RS09950	0.47	-0.5
2,218,366	+		RALBFv3_RS09950	0.47	-0.1
2,218,367	-		RALBFv3_RS09950	0.47	+0.3
2,218,367	-		RALBFv3_RS09950	0.47	-0.6
2,218,384	+		RALBFv3_RS09950	0.47	+0.8
2,218,385	-		RALBFv3_RS09950	0.47	-1.2
2,218,528	+		RALBFv3_RS09950	0.50	+0.0
2,218,529	-		RALBFv3_RS09950	0.50	+0.5
2,218,529	-		RALBFv3_RS09950	0.50	-0.8
2,218,534	+		RALBFv3_RS09950	0.50	+0.2
2,218,534	+		RALBFv3_RS09950	0.50	+0.4
2,218,534	+		RALBFv3_RS09950	0.50	-1.4
2,218,535	-		RALBFv3_RS09950	0.50	+1.4
2,218,535	-		RALBFv3_RS09950	0.50	-0.4
2,218,652	+		RALBFv3_RS09950	0.53	-0.8
2,218,653	-		RALBFv3_RS09950	0.53	-0.8
2,218,807	+		RALBFv3_RS09950	0.56	+0.6
2,218,807	+		RALBFv3_RS09950	0.56	-1.4
2,218,808	-		RALBFv3_RS09950	0.56	+1.8
2,218,814	-		RALBFv3_RS09950	0.56	+1.4
2,218,814	-		RALBFv3_RS09950	0.56	+0.4
2,218,852	+		RALBFv3_RS09950	0.56	+1.2
2,218,852	+		RALBFv3_RS09950	0.56	+1.4
2,218,946	-		RALBFv3_RS09950	0.58	-0.5
2,219,071	+		RALBFv3_RS09950	0.61	+1.7
2,219,071	+		RALBFv3_RS09950	0.61	+0.2
2,219,071	+		RALBFv3_RS09950	0.61	-1.0
2,219,071	+		RALBFv3_RS09950	0.61	-1.0
2,219,071	+		RALBFv3_RS09950	0.61	+0.2
2,219,071	+		RALBFv3_RS09950	0.61	-0.9
2,219,072	-		RALBFv3_RS09950	0.61	+1.7
2,219,077	+		RALBFv3_RS09950	0.61	-0.0
2,219,078	-		RALBFv3_RS09950	0.61	-0.6
2,219,078	-		RALBFv3_RS09950	0.61	-1.4
2,219,192	-		RALBFv3_RS09950	0.63	-0.6
2,219,207	+		RALBFv3_RS09950	0.64	-0.2
2,219,208	-		RALBFv3_RS09950	0.64	+1.4
2,219,208	-		RALBFv3_RS09950	0.64	-1.6
2,219,209	+		RALBFv3_RS09950	0.64	-0.4
2,219,209	+		RALBFv3_RS09950	0.64	+0.4
2,219,210	-		RALBFv3_RS09950	0.64	+0.9
2,219,210	-		RALBFv3_RS09950	0.64	-1.1
2,219,353	+		RALBFv3_RS09950	0.66	+0.1
2,219,353	+		RALBFv3_RS09950	0.66	-0.8
2,219,354	-		RALBFv3_RS09950	0.66	+1.4
2,219,360	-		RALBFv3_RS09950	0.67	-1.4
2,219,360	-		RALBFv3_RS09950	0.67	-0.1
2,219,396	+		RALBFv3_RS09950	0.67	+0.7
2,219,398	+		RALBFv3_RS09950	0.67	-0.8
2,219,398	+		RALBFv3_RS09950	0.67	+0.4
2,219,398	-		RALBFv3_RS09950	0.67	+1.4
2,219,629	+		RALBFv3_RS09950	0.72	-0.4
2,219,629	+		RALBFv3_RS09950	0.72	-0.1
2,219,629	+		RALBFv3_RS09950	0.72	+3.7
2,219,629	+		RALBFv3_RS09950	0.72	-0.3
2,219,630	-		RALBFv3_RS09950	0.72	+1.0
2,219,636	-		RALBFv3_RS09950	0.72	-1.8
2,219,636	-		RALBFv3_RS09950	0.72	+0.5
2,219,905	+		RALBFv3_RS09950	0.77	+1.1
2,219,906	-		RALBFv3_RS09950	0.77	-0.5
2,219,906	-		RALBFv3_RS09950	0.77	+3.0
2,219,906	-		RALBFv3_RS09950	0.77	-1.5
2,219,906	-		RALBFv3_RS09950	0.77	+0.2
2,219,906	-		RALBFv3_RS09950	0.77	+1.5
2,219,906	-		RALBFv3_RS09950	0.77	-0.7
2,219,911	+		RALBFv3_RS09950	0.78	+0.5
2,219,912	-		RALBFv3_RS09950	0.78	-0.9
2,219,912	-		RALBFv3_RS09950	0.78	-0.6
2,219,953	+		RALBFv3_RS09950	0.78	+0.3
2,219,953	+		RALBFv3_RS09950	0.78	+2.9
2,219,954	-		RALBFv3_RS09950	0.78	+0.2
2,220,112	+		RALBFv3_RS09950	0.82	-0.7
2,220,112	+		RALBFv3_RS09950	0.82	+1.4
2,220,112	+		RALBFv3_RS09950	0.82	+1.4
2,220,112	+		RALBFv3_RS09950	0.82	+0.6
2,220,112	+		RALBFv3_RS09950	0.82	-0.9
2,220,113	-		RALBFv3_RS09950	0.82	+0.5
2,220,113	-		RALBFv3_RS09950	0.82	-0.1
2,220,113	-		RALBFv3_RS09950	0.82	+1.4
2,220,113	-		RALBFv3_RS09950	0.82	+0.7
2,220,113	-		RALBFv3_RS09950	0.82	+2.6
2,220,113	-		RALBFv3_RS09950	0.82	-1.0
2,220,113	-		RALBFv3_RS09950	0.82	-0.2
2,220,274	+		RALBFv3_RS09950	0.85	+1.4
2,220,274	+		RALBFv3_RS09950	0.85	+1.2
2,220,274	+		RALBFv3_RS09950	0.85	-1.3
2,220,275	-		RALBFv3_RS09950	0.85	+3.0
2,220,275	-		RALBFv3_RS09950	0.85	+1.0
2,220,275	-		RALBFv3_RS09950	0.85	-1.9
2,220,275	-		RALBFv3_RS09950	0.85	-0.8
2,220,589	+				-0.2
2,220,589	+				+0.8
2,220,590	-				+0.3
2,220,635	-				-0.0
2,220,685	+				+2.0
2,220,685	+				+1.0
2,220,686	-				+0.2
2,220,823	+				-0.2
2,220,823	+				+0.9
2,220,823	+				+0.4
2,220,823	+				-0.1
2,220,823	+				-0.2
2,220,823	+				+1.4
2,220,824	-				+0.2
2,220,836	+				+0.4
2,221,216	-				-0.4
2,221,338	+				-0.6
2,221,548	+				+1.4
2,221,686	-		RALBFv3_RS09955	0.27	+0.8
2,221,737	+		RALBFv3_RS09955	0.36	+1.6
2,221,900	-		RALBFv3_RS09955	0.66	-2.6
2,221,900	-		RALBFv3_RS09955	0.66	+0.1
2,221,945	-		RALBFv3_RS09955	0.74	-0.2