Experiment: Plant=Tomato cv. Bonney Best; Treatment=None; Sample=xylem local; Collection=Direct; Time=3 dpi
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS08900 and RALBFv3_RS08905 are separated by 95 nucleotides RALBFv3_RS08905 and RALBFv3_RS08910 are separated by 44 nucleotides RALBFv3_RS08910 and RALBFv3_RS08915 are separated by 119 nucleotides RALBFv3_RS08915 and RALBFv3_RS08920 are separated by 253 nucleotides
RALBFv3_RS08900: RALBFv3_RS08900 - phosphohydrolase, at 1,966,283 to 1,966,834
_RS08900
RALBFv3_RS08905: RALBFv3_RS08905 - hypothetical protein, at 1,966,930 to 1,967,659
_RS08905
RALBFv3_RS08910: RALBFv3_RS08910 - hypothetical protein, at 1,967,704 to 1,968,147
_RS08910
RALBFv3_RS08915: RALBFv3_RS08915 - hypothetical protein, at 1,968,267 to 1,968,485
_RS08915
RALBFv3_RS08920: RALBFv3_RS08920 - branched-chain amino acid ABC transporter permease, at 1,968,739 to 1,969,731
_RS08920
Position (kb) 1967
1968
1969 Strain fitness (log2 ratio) -2
-1
0
1 at 1966.858 kb on - strand at 1966.858 kb on - strand at 1966.949 kb on + strand at 1966.949 kb on + strand at 1967.030 kb on + strand, within RALBFv3_RS08905 at 1967.031 kb on - strand, within RALBFv3_RS08905 at 1967.322 kb on + strand, within RALBFv3_RS08905 at 1967.454 kb on + strand, within RALBFv3_RS08905 at 1967.475 kb on + strand, within RALBFv3_RS08905 at 1967.846 kb on + strand, within RALBFv3_RS08910 at 1968.333 kb on + strand, within RALBFv3_RS08915 at 1968.480 kb on - strand at 1968.550 kb on + strand at 1968.550 kb on + strand at 1968.569 kb on - strand at 1968.569 kb on - strand at 1968.606 kb on + strand at 1968.607 kb on - strand at 1968.635 kb on + strand at 1968.651 kb on - strand at 1968.651 kb on - strand at 1968.661 kb on + strand at 1968.661 kb on + strand at 1968.661 kb on + strand at 1968.674 kb on + strand at 1968.675 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato cv. Bonney Best; Treatment=None; Sample=xylem local; Collection=Direct; Time=3 dpi remove 1,966,858 - +1.3 1,966,858 - +0.3 1,966,949 + -1.7 1,966,949 + -1.4 1,967,030 + RALBFv3_RS08905 0.14 +0.2 1,967,031 - RALBFv3_RS08905 0.14 -2.5 1,967,322 + RALBFv3_RS08905 0.54 +0.6 1,967,454 + RALBFv3_RS08905 0.72 +0.3 1,967,475 + RALBFv3_RS08905 0.75 +0.3 1,967,846 + RALBFv3_RS08910 0.32 +1.0 1,968,333 + RALBFv3_RS08915 0.30 +1.4 1,968,480 - -0.5 1,968,550 + -0.8 1,968,550 + -1.4 1,968,569 - -2.1 1,968,569 - -1.0 1,968,606 + -0.4 1,968,607 - +1.4 1,968,635 + -1.9 1,968,651 - -0.8 1,968,651 - -1.4 1,968,661 + -0.7 1,968,661 + -0.9 1,968,661 + +1.4 1,968,674 + +0.1 1,968,675 - -0.9
Or see this region's nucleotide sequence