Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS03050

Experiment: Plant=Tomato cv. Bonney Best; Treatment=None; Sample=xylem local; Collection=Direct; Time=3 dpi

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRALBFv3_RS03040 and RALBFv3_RS03045 are separated by 55 nucleotidesRALBFv3_RS03045 and RALBFv3_RS03050 overlap by 1 nucleotidesRALBFv3_RS03050 and RALBFv3_RS03055 are separated by 344 nucleotidesRALBFv3_RS03055 and RALBFv3_RS03060 overlap by 4 nucleotides RALBFv3_RS03040: RALBFv3_RS03040 - ketol-acid reductoisomerase, at 667,889 to 668,905 _RS03040 RALBFv3_RS03045: RALBFv3_RS03045 - acetolactate synthase small subunit, at 668,961 to 669,452 _RS03045 RALBFv3_RS03050: RALBFv3_RS03050 - acetolactate synthase 3 large subunit, at 669,452 to 671,209 _RS03050 RALBFv3_RS03055: RALBFv3_RS03055 - RNA polymerase sigma factor, at 671,554 to 672,120 _RS03055 RALBFv3_RS03060: RALBFv3_RS03060 - DUF3619 domain-containing protein, at 672,117 to 672,557 _RS03060 Position (kb) 669 670 671 672Strain fitness (log2 ratio) -1 0 1at 668.928 kb on - strandat 669.095 kb on - strand, within RALBFv3_RS03045at 671.358 kb on + strandat 671.454 kb on + strandat 671.553 kb on + strandat 671.553 kb on + strandat 671.905 kb on + strand, within RALBFv3_RS03055at 671.906 kb on - strand, within RALBFv3_RS03055at 671.906 kb on - strand, within RALBFv3_RS03055at 672.116 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato cv. Bonney Best; Treatment=None; Sample=xylem local; Collection=Direct; Time=3 dpi
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668,928 - -0.0
669,095 - RALBFv3_RS03045 0.27 +1.1
671,358 + -0.3
671,454 + +0.1
671,553 + +0.4
671,553 + +0.3
671,905 + RALBFv3_RS03055 0.62 -1.1
671,906 - RALBFv3_RS03055 0.62 -0.8
671,906 - RALBFv3_RS03055 0.62 -1.4
672,116 + +1.3

Or see this region's nucleotide sequence