Experiment: Plant=Tomato cv. Bonney Best; Treatment=None; Sample=xylem local; Collection=Direct; Time=3 dpi
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS02420 and RALBFv3_RS23640 are separated by 343 nucleotides RALBFv3_RS23640 and RALBFv3_RS02425 are separated by 216 nucleotides RALBFv3_RS02425 and RALBFv3_RS02430 are separated by 676 nucleotides
RALBFv3_RS02420: RALBFv3_RS02420 - methyl-accepting chemotaxis protein, at 538,968 to 540,533
_RS02420
RALBFv3_RS23640: RALBFv3_RS23640 - hypothetical protein, at 540,877 to 541,104
_RS23640
RALBFv3_RS02425: RALBFv3_RS02425 - helix-turn-helix transcriptional regulator, at 541,321 to 542,079
_RS02425
RALBFv3_RS02430: RALBFv3_RS02430 - N-acetyltransferase, at 542,756 to 543,283
_RS02430
Position (kb) 541
542
543 Strain fitness (log2 ratio) -2
-1
0
1
2 at 540.509 kb on + strand at 540.647 kb on + strand at 540.651 kb on + strand at 540.666 kb on - strand at 541.018 kb on - strand, within RALBFv3_RS23640 at 541.266 kb on - strand at 541.322 kb on + strand at 541.324 kb on + strand at 541.683 kb on - strand, within RALBFv3_RS02425 at 541.742 kb on + strand, within RALBFv3_RS02425 at 541.743 kb on - strand, within RALBFv3_RS02425 at 541.806 kb on - strand, within RALBFv3_RS02425 at 541.886 kb on + strand, within RALBFv3_RS02425 at 541.886 kb on + strand, within RALBFv3_RS02425 at 542.233 kb on + strand at 542.411 kb on + strand at 542.575 kb on + strand at 542.612 kb on + strand at 542.612 kb on + strand at 542.613 kb on - strand at 542.749 kb on + strand at 542.819 kb on + strand, within RALBFv3_RS02430 at 542.855 kb on + strand, within RALBFv3_RS02430 at 542.855 kb on + strand, within RALBFv3_RS02430 at 542.855 kb on + strand, within RALBFv3_RS02430 at 542.855 kb on + strand, within RALBFv3_RS02430 at 542.867 kb on + strand, within RALBFv3_RS02430 at 542.868 kb on - strand, within RALBFv3_RS02430 at 542.892 kb on + strand, within RALBFv3_RS02430 at 542.892 kb on + strand, within RALBFv3_RS02430 at 542.893 kb on - strand, within RALBFv3_RS02430 at 542.893 kb on - strand, within RALBFv3_RS02430 at 542.908 kb on - strand, within RALBFv3_RS02430
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato cv. Bonney Best; Treatment=None; Sample=xylem local; Collection=Direct; Time=3 dpi remove 540,509 + +0.5 540,647 + +0.4 540,651 + +0.4 540,666 - -1.0 541,018 - RALBFv3_RS23640 0.62 -1.5 541,266 - -0.5 541,322 + +0.6 541,324 + +0.1 541,683 - RALBFv3_RS02425 0.48 -1.0 541,742 + RALBFv3_RS02425 0.55 -0.5 541,743 - RALBFv3_RS02425 0.56 +0.5 541,806 - RALBFv3_RS02425 0.64 -0.1 541,886 + RALBFv3_RS02425 0.74 +2.3 541,886 + RALBFv3_RS02425 0.74 -1.0 542,233 + -0.1 542,411 + -0.8 542,575 + -0.6 542,612 + -0.9 542,612 + +1.1 542,613 - +1.0 542,749 + -0.5 542,819 + RALBFv3_RS02430 0.12 -0.5 542,855 + RALBFv3_RS02430 0.19 -0.2 542,855 + RALBFv3_RS02430 0.19 -0.3 542,855 + RALBFv3_RS02430 0.19 -0.7 542,855 + RALBFv3_RS02430 0.19 -1.7 542,867 + RALBFv3_RS02430 0.21 +0.9 542,868 - RALBFv3_RS02430 0.21 +0.8 542,892 + RALBFv3_RS02430 0.26 -2.1 542,892 + RALBFv3_RS02430 0.26 -2.1 542,893 - RALBFv3_RS02430 0.26 +0.2 542,893 - RALBFv3_RS02430 0.26 -0.1 542,908 - RALBFv3_RS02430 0.29 -0.1
Or see this region's nucleotide sequence