Experiment: Plant=Tomato cv. Bonney Best; Treatment=None; Sample=xylem local; Collection=Direct; Time=3 dpi
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS02415 and RALBFv3_RS02420 are separated by 200 nucleotides RALBFv3_RS02420 and RALBFv3_RS23640 are separated by 343 nucleotides RALBFv3_RS23640 and RALBFv3_RS02425 are separated by 216 nucleotides
RALBFv3_RS02415: RALBFv3_RS02415 - GGDEF domain-containing protein, at 537,169 to 538,767
_RS02415
RALBFv3_RS02420: RALBFv3_RS02420 - methyl-accepting chemotaxis protein, at 538,968 to 540,533
_RS02420
RALBFv3_RS23640: RALBFv3_RS23640 - hypothetical protein, at 540,877 to 541,104
_RS23640
RALBFv3_RS02425: RALBFv3_RS02425 - helix-turn-helix transcriptional regulator, at 541,321 to 542,079
_RS02425
Position (kb) 538
539
540
541 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 538.045 kb on - strand, within RALBFv3_RS02415 at 538.144 kb on - strand, within RALBFv3_RS02415 at 538.144 kb on - strand, within RALBFv3_RS02415 at 538.158 kb on - strand, within RALBFv3_RS02415 at 538.158 kb on - strand, within RALBFv3_RS02415 at 538.187 kb on + strand, within RALBFv3_RS02415 at 538.187 kb on + strand, within RALBFv3_RS02415 at 538.187 kb on + strand, within RALBFv3_RS02415 at 538.188 kb on - strand, within RALBFv3_RS02415 at 538.188 kb on - strand, within RALBFv3_RS02415 at 538.193 kb on + strand, within RALBFv3_RS02415 at 538.193 kb on + strand, within RALBFv3_RS02415 at 538.194 kb on - strand, within RALBFv3_RS02415 at 538.194 kb on - strand, within RALBFv3_RS02415 at 538.211 kb on + strand, within RALBFv3_RS02415 at 538.212 kb on - strand, within RALBFv3_RS02415 at 538.256 kb on + strand, within RALBFv3_RS02415 at 538.256 kb on + strand, within RALBFv3_RS02415 at 538.634 kb on + strand at 538.688 kb on + strand at 538.697 kb on + strand at 538.697 kb on + strand at 538.697 kb on + strand at 538.698 kb on - strand at 538.844 kb on + strand at 538.844 kb on + strand at 538.845 kb on - strand at 538.845 kb on - strand at 538.845 kb on - strand at 538.845 kb on - strand at 538.845 kb on - strand at 538.845 kb on - strand at 539.885 kb on + strand, within RALBFv3_RS02420 at 539.886 kb on - strand, within RALBFv3_RS02420 at 540.149 kb on - strand, within RALBFv3_RS02420 at 540.509 kb on + strand at 540.647 kb on + strand at 540.651 kb on + strand at 540.666 kb on - strand at 541.018 kb on - strand, within RALBFv3_RS23640 at 541.266 kb on - strand at 541.322 kb on + strand at 541.324 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato cv. Bonney Best; Treatment=None; Sample=xylem local; Collection=Direct; Time=3 dpi remove 538,045 - RALBFv3_RS02415 0.55 -1.0 538,144 - RALBFv3_RS02415 0.61 -1.4 538,144 - RALBFv3_RS02415 0.61 -2.1 538,158 - RALBFv3_RS02415 0.62 +1.1 538,158 - RALBFv3_RS02415 0.62 -0.0 538,187 + RALBFv3_RS02415 0.64 -0.5 538,187 + RALBFv3_RS02415 0.64 +0.7 538,187 + RALBFv3_RS02415 0.64 -0.8 538,188 - RALBFv3_RS02415 0.64 -0.2 538,188 - RALBFv3_RS02415 0.64 -0.5 538,193 + RALBFv3_RS02415 0.64 +0.7 538,193 + RALBFv3_RS02415 0.64 -0.4 538,194 - RALBFv3_RS02415 0.64 +0.5 538,194 - RALBFv3_RS02415 0.64 -0.6 538,211 + RALBFv3_RS02415 0.65 -0.2 538,212 - RALBFv3_RS02415 0.65 +0.1 538,256 + RALBFv3_RS02415 0.68 -1.1 538,256 + RALBFv3_RS02415 0.68 +0.5 538,634 + -0.1 538,688 + -0.2 538,697 + +1.0 538,697 + +0.6 538,697 + -1.0 538,698 - +2.8 538,844 + +0.9 538,844 + +0.6 538,845 - -0.3 538,845 - +1.9 538,845 - +0.0 538,845 - -0.1 538,845 - -1.1 538,845 - -1.6 539,885 + RALBFv3_RS02420 0.59 -0.5 539,886 - RALBFv3_RS02420 0.59 +0.6 540,149 - RALBFv3_RS02420 0.75 +1.1 540,509 + +0.5 540,647 + +0.4 540,651 + +0.4 540,666 - -1.0 541,018 - RALBFv3_RS23640 0.62 -1.5 541,266 - -0.5 541,322 + +0.6 541,324 + +0.1
Or see this region's nucleotide sequence