Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS26385 and BWI76_RS26390 are separated by 256 nucleotides BWI76_RS26390 and BWI76_RS26395 overlap by 8 nucleotides BWI76_RS26395 and BWI76_RS26400 are separated by 2 nucleotides
BWI76_RS26385: BWI76_RS26385 - RNA polymerase sigma factor RpoH, at 5,462,206 to 5,463,060
_RS26385
BWI76_RS26390: BWI76_RS26390 - cell division protein FtsX, at 5,463,317 to 5,464,375
_RS26390
BWI76_RS26395: BWI76_RS26395 - cell division protein FtsE, at 5,464,368 to 5,465,036
_RS26395
BWI76_RS26400: BWI76_RS26400 - signal recognition particle-docking protein FtsY, at 5,465,039 to 5,466,553
_RS26400
Position (kb)
5463
5464
5465 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 5463.135 kb on - strand at 5463.164 kb on - strand at 5463.256 kb on + strand at 5463.441 kb on - strand, within BWI76_RS26390 at 5463.615 kb on - strand, within BWI76_RS26390 at 5463.904 kb on + strand, within BWI76_RS26390 at 5463.904 kb on + strand, within BWI76_RS26390 at 5463.986 kb on - strand, within BWI76_RS26390 at 5464.056 kb on + strand, within BWI76_RS26390 at 5464.491 kb on - strand, within BWI76_RS26395 at 5464.491 kb on - strand, within BWI76_RS26395 at 5464.767 kb on - strand, within BWI76_RS26395
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x remove 5,463,135 - +0.0 5,463,164 - +0.3 5,463,256 + -2.1 5,463,441 - BWI76_RS26390 0.12 -2.3 5,463,615 - BWI76_RS26390 0.28 -0.5 5,463,904 + BWI76_RS26390 0.55 +0.6 5,463,904 + BWI76_RS26390 0.55 -0.7 5,463,986 - BWI76_RS26390 0.63 -1.7 5,464,056 + BWI76_RS26390 0.70 -2.2 5,464,491 - BWI76_RS26395 0.18 -1.5 5,464,491 - BWI76_RS26395 0.18 -0.8 5,464,767 - BWI76_RS26395 0.60 -3.0
Or see this region's nucleotide sequence