Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS24585 and BWI76_RS24590 are separated by 357 nucleotides BWI76_RS24590 and BWI76_RS24595 overlap by 4 nucleotides BWI76_RS24595 and BWI76_RS24600 are separated by 10 nucleotides BWI76_RS24600 and BWI76_RS24605 are separated by 10 nucleotides
BWI76_RS24585: BWI76_RS24585 - glycerol dehydrogenase, at 5,124,712 to 5,125,809
_RS24585
BWI76_RS24590: BWI76_RS24590 - hypothetical protein, at 5,126,167 to 5,126,409
_RS24590
BWI76_RS24595: BWI76_RS24595 - dihydroxyacetone kinase subunit DhaK, at 5,126,406 to 5,127,476
_RS24595
BWI76_RS24600: BWI76_RS24600 - dihydroxyacetone kinase, at 5,127,487 to 5,128,119
_RS24600
BWI76_RS24605: BWI76_RS24605 - dihydroxyacetone kinase subunit DhaM, at 5,128,130 to 5,129,551
_RS24605
Position (kb) 5126
5127
5128 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5125.429 kb on - strand, within BWI76_RS24585 at 5125.438 kb on + strand, within BWI76_RS24585 at 5125.467 kb on + strand, within BWI76_RS24585 at 5125.649 kb on - strand, within BWI76_RS24585 at 5125.704 kb on - strand at 5125.826 kb on - strand at 5125.829 kb on + strand at 5125.920 kb on + strand at 5126.439 kb on - strand at 5126.450 kb on + strand at 5126.725 kb on - strand, within BWI76_RS24595 at 5126.783 kb on + strand, within BWI76_RS24595 at 5126.855 kb on + strand, within BWI76_RS24595 at 5126.976 kb on - strand, within BWI76_RS24595 at 5127.021 kb on - strand, within BWI76_RS24595 at 5127.184 kb on - strand, within BWI76_RS24595 at 5127.384 kb on - strand at 5127.401 kb on + strand at 5127.444 kb on + strand at 5127.444 kb on + strand at 5127.452 kb on - strand at 5127.456 kb on + strand at 5127.456 kb on + strand at 5127.464 kb on - strand at 5127.464 kb on - strand at 5127.526 kb on - strand at 5127.624 kb on + strand, within BWI76_RS24600 at 5127.940 kb on - strand, within BWI76_RS24600 at 5128.013 kb on - strand, within BWI76_RS24600 at 5128.087 kb on + strand at 5128.266 kb on + strand at 5128.357 kb on - strand, within BWI76_RS24605 at 5128.375 kb on + strand, within BWI76_RS24605 at 5128.419 kb on - strand, within BWI76_RS24605 at 5128.437 kb on - strand, within BWI76_RS24605
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x remove 5,125,429 - BWI76_RS24585 0.65 -0.8 5,125,438 + BWI76_RS24585 0.66 +2.0 5,125,467 + BWI76_RS24585 0.69 -1.8 5,125,649 - BWI76_RS24585 0.85 +2.4 5,125,704 - +1.8 5,125,826 - +0.4 5,125,829 + -1.5 5,125,920 + -0.4 5,126,439 - -1.4 5,126,450 + -1.0 5,126,725 - BWI76_RS24595 0.30 +0.0 5,126,783 + BWI76_RS24595 0.35 -1.5 5,126,855 + BWI76_RS24595 0.42 -2.0 5,126,976 - BWI76_RS24595 0.53 -0.1 5,127,021 - BWI76_RS24595 0.57 -0.7 5,127,184 - BWI76_RS24595 0.73 -1.4 5,127,384 - +0.5 5,127,401 + -0.4 5,127,444 + -0.6 5,127,444 + -0.3 5,127,452 - -3.1 5,127,456 + +0.0 5,127,456 + +0.4 5,127,464 - -0.5 5,127,464 - -1.0 5,127,526 - -1.9 5,127,624 + BWI76_RS24600 0.22 -0.8 5,127,940 - BWI76_RS24600 0.72 +2.6 5,128,013 - BWI76_RS24600 0.83 -1.5 5,128,087 + -0.9 5,128,266 + -2.6 5,128,357 - BWI76_RS24605 0.16 -0.7 5,128,375 + BWI76_RS24605 0.17 -1.0 5,128,419 - BWI76_RS24605 0.20 -2.4 5,128,437 - BWI76_RS24605 0.22 -1.4
Or see this region's nucleotide sequence