Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS23650

Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS23645 and BWI76_RS23650 are separated by 14 nucleotidesBWI76_RS23650 and BWI76_RS23655 are separated by 112 nucleotidesBWI76_RS23655 and BWI76_RS23660 are separated by 47 nucleotides BWI76_RS23645: BWI76_RS23645 - uronate isomerase, at 4,933,998 to 4,935,413 _RS23645 BWI76_RS23650: BWI76_RS23650 - MFS transporter, at 4,935,428 to 4,936,975 _RS23650 BWI76_RS23655: BWI76_RS23655 - DeoR family transcriptional regulator, at 4,937,088 to 4,937,861 _RS23655 BWI76_RS23660: BWI76_RS23660 - pentose kinase, at 4,937,909 to 4,939,414 _RS23660 Position (kb) 4935 4936 4937Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4934.434 kb on + strand, within BWI76_RS23645at 4934.442 kb on + strand, within BWI76_RS23645at 4934.442 kb on + strand, within BWI76_RS23645at 4934.442 kb on + strand, within BWI76_RS23645at 4934.442 kb on + strand, within BWI76_RS23645at 4934.442 kb on + strand, within BWI76_RS23645at 4934.442 kb on + strand, within BWI76_RS23645at 4934.442 kb on - strand, within BWI76_RS23645at 4934.442 kb on - strand, within BWI76_RS23645at 4934.442 kb on - strand, within BWI76_RS23645at 4934.442 kb on - strand, within BWI76_RS23645at 4934.442 kb on - strandat 4934.448 kb on + strandat 4934.448 kb on + strand, within BWI76_RS23645at 4934.448 kb on + strand, within BWI76_RS23645at 4934.449 kb on - strand, within BWI76_RS23645at 4934.450 kb on + strand, within BWI76_RS23645at 4934.450 kb on + strand, within BWI76_RS23645at 4934.450 kb on + strand, within BWI76_RS23645at 4934.450 kb on + strand, within BWI76_RS23645at 4934.450 kb on + strand, within BWI76_RS23645at 4934.451 kb on - strand, within BWI76_RS23645at 4934.451 kb on - strand, within BWI76_RS23645at 4934.451 kb on - strand, within BWI76_RS23645at 4934.451 kb on - strand, within BWI76_RS23645at 4934.453 kb on + strand, within BWI76_RS23645at 4934.453 kb on + strand, within BWI76_RS23645at 4934.453 kb on + strand, within BWI76_RS23645at 4934.453 kb on + strand, within BWI76_RS23645at 4934.453 kb on + strand, within BWI76_RS23645at 4934.453 kb on + strand, within BWI76_RS23645at 4934.453 kb on + strand, within BWI76_RS23645at 4934.453 kb on + strand, within BWI76_RS23645at 4934.453 kb on + strand, within BWI76_RS23645at 4934.453 kb on + strand, within BWI76_RS23645at 4934.456 kb on - strand, within BWI76_RS23645at 4934.458 kb on + strand, within BWI76_RS23645at 4934.458 kb on - strand, within BWI76_RS23645at 4934.458 kb on - strand, within BWI76_RS23645at 4934.458 kb on - strand, within BWI76_RS23645at 4934.458 kb on - strand, within BWI76_RS23645at 4934.458 kb on - strand, within BWI76_RS23645at 4934.461 kb on + strand, within BWI76_RS23645at 4934.461 kb on - strand, within BWI76_RS23645at 4934.461 kb on - strand, within BWI76_RS23645at 4934.461 kb on - strand, within BWI76_RS23645at 4934.461 kb on - strandat 4934.461 kb on - strand, within BWI76_RS23645at 4934.461 kb on - strand, within BWI76_RS23645at 4934.461 kb on - strand, within BWI76_RS23645at 4934.461 kb on - strand, within BWI76_RS23645at 4934.461 kb on - strand, within BWI76_RS23645at 4934.461 kb on - strand, within BWI76_RS23645at 4934.461 kb on - strand, within BWI76_RS23645at 4934.461 kb on - strand, within BWI76_RS23645at 4934.461 kb on - strand, within BWI76_RS23645at 4934.461 kb on - strand, within BWI76_RS23645at 4934.461 kb on - strand, within BWI76_RS23645at 4934.466 kb on - strand, within BWI76_RS23645at 4934.479 kb on + strand, within BWI76_RS23645at 4934.545 kb on + strand, within BWI76_RS23645at 4934.548 kb on + strand, within BWI76_RS23645at 4934.556 kb on - strand, within BWI76_RS23645at 4934.558 kb on + strand, within BWI76_RS23645at 4934.558 kb on + strand, within BWI76_RS23645at 4934.558 kb on + strand, within BWI76_RS23645at 4934.558 kb on + strand, within BWI76_RS23645at 4934.566 kb on - strand, within BWI76_RS23645at 4934.566 kb on - strand, within BWI76_RS23645at 4934.566 kb on - strand, within BWI76_RS23645at 4934.566 kb on - strand, within BWI76_RS23645at 4934.576 kb on - strand, within BWI76_RS23645at 4934.587 kb on - strand, within BWI76_RS23645at 4934.621 kb on - strand, within BWI76_RS23645at 4934.621 kb on - strand, within BWI76_RS23645at 4934.634 kb on + strand, within BWI76_RS23645at 4934.642 kb on + strand, within BWI76_RS23645at 4934.682 kb on + strand, within BWI76_RS23645at 4934.683 kb on + strand, within BWI76_RS23645at 4934.683 kb on + strand, within BWI76_RS23645at 4934.683 kb on + strand, within BWI76_RS23645at 4934.683 kb on + strand, within BWI76_RS23645at 4934.690 kb on - strand, within BWI76_RS23645at 4934.690 kb on - strand, within BWI76_RS23645at 4934.691 kb on - strand, within BWI76_RS23645at 4934.691 kb on - strand, within BWI76_RS23645at 4934.691 kb on - strand, within BWI76_RS23645at 4934.691 kb on - strand, within BWI76_RS23645at 4934.693 kb on + strand, within BWI76_RS23645at 4934.693 kb on - strand, within BWI76_RS23645at 4934.693 kb on - strand, within BWI76_RS23645at 4934.733 kb on + strand, within BWI76_RS23645at 4934.738 kb on + strand, within BWI76_RS23645at 4934.738 kb on + strand, within BWI76_RS23645at 4934.738 kb on + strandat 4934.738 kb on + strand, within BWI76_RS23645at 4934.746 kb on - strand, within BWI76_RS23645at 4934.805 kb on + strand, within BWI76_RS23645at 4934.856 kb on - strand, within BWI76_RS23645at 4934.866 kb on - strand, within BWI76_RS23645at 4934.993 kb on + strand, within BWI76_RS23645at 4935.018 kb on + strand, within BWI76_RS23645at 4935.023 kb on + strand, within BWI76_RS23645at 4935.031 kb on - strand, within BWI76_RS23645at 4935.074 kb on - strand, within BWI76_RS23645at 4935.136 kb on - strand, within BWI76_RS23645at 4935.203 kb on - strand, within BWI76_RS23645at 4935.253 kb on + strand, within BWI76_RS23645at 4935.253 kb on + strand, within BWI76_RS23645at 4935.296 kb on + strandat 4935.296 kb on + strandat 4935.304 kb on - strandat 4935.408 kb on + strandat 4935.416 kb on - strandat 4935.416 kb on - strandat 4935.416 kb on - strandat 4935.418 kb on + strandat 4935.418 kb on + strandat 4935.418 kb on + strandat 4935.418 kb on + strandat 4935.418 kb on + strandat 4935.419 kb on + strandat 4935.425 kb on + strandat 4935.426 kb on - strandat 4935.426 kb on - strandat 4935.426 kb on - strandat 4935.426 kb on - strandat 4935.504 kb on + strandat 4935.582 kb on - strandat 4935.612 kb on + strand, within BWI76_RS23650at 4935.630 kb on - strand, within BWI76_RS23650at 4935.631 kb on - strand, within BWI76_RS23650at 4935.697 kb on + strand, within BWI76_RS23650at 4935.721 kb on + strand, within BWI76_RS23650at 4935.721 kb on + strand, within BWI76_RS23650at 4935.721 kb on + strand, within BWI76_RS23650at 4935.721 kb on + strand, within BWI76_RS23650at 4935.775 kb on + strand, within BWI76_RS23650at 4935.918 kb on + strand, within BWI76_RS23650at 4935.923 kb on + strand, within BWI76_RS23650at 4935.963 kb on - strand, within BWI76_RS23650at 4935.990 kb on + strand, within BWI76_RS23650at 4936.010 kb on - strand, within BWI76_RS23650at 4936.043 kb on - strand, within BWI76_RS23650at 4936.093 kb on + strand, within BWI76_RS23650at 4936.101 kb on - strand, within BWI76_RS23650at 4936.149 kb on + strand, within BWI76_RS23650at 4936.157 kb on - strand, within BWI76_RS23650at 4936.157 kb on - strandat 4936.157 kb on - strand, within BWI76_RS23650at 4936.157 kb on - strand, within BWI76_RS23650at 4936.380 kb on + strand, within BWI76_RS23650at 4936.511 kb on - strand, within BWI76_RS23650at 4936.582 kb on - strand, within BWI76_RS23650at 4936.710 kb on + strand, within BWI76_RS23650at 4936.783 kb on + strand, within BWI76_RS23650at 4936.849 kb on + strandat 4936.882 kb on - strandat 4936.969 kb on - strandat 4936.985 kb on + strandat 4937.187 kb on - strand, within BWI76_RS23655at 4937.187 kb on - strand, within BWI76_RS23655at 4937.221 kb on + strand, within BWI76_RS23655at 4937.656 kb on + strand, within BWI76_RS23655at 4937.664 kb on - strand, within BWI76_RS23655at 4937.713 kb on - strand, within BWI76_RS23655at 4937.945 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x
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4,934,434 + BWI76_RS23645 0.31 -2.2
4,934,442 + BWI76_RS23645 0.31 -1.9
4,934,442 + BWI76_RS23645 0.31 +0.3
4,934,442 + BWI76_RS23645 0.31 +1.4
4,934,442 + BWI76_RS23645 0.31 +0.2
4,934,442 + BWI76_RS23645 0.31 +0.2
4,934,442 + BWI76_RS23645 0.31 -1.1
4,934,442 - BWI76_RS23645 0.31 +1.0
4,934,442 - BWI76_RS23645 0.31 -0.4
4,934,442 - BWI76_RS23645 0.31 +0.3
4,934,442 - BWI76_RS23645 0.31 -1.0
4,934,442 - -0.0
4,934,448 + +1.0
4,934,448 + BWI76_RS23645 0.32 +2.2
4,934,448 + BWI76_RS23645 0.32 -1.4
4,934,449 - BWI76_RS23645 0.32 +2.2
4,934,450 + BWI76_RS23645 0.32 +1.6
4,934,450 + BWI76_RS23645 0.32 +0.2
4,934,450 + BWI76_RS23645 0.32 -0.3
4,934,450 + BWI76_RS23645 0.32 +0.1
4,934,450 + BWI76_RS23645 0.32 +2.2
4,934,451 - BWI76_RS23645 0.32 -0.2
4,934,451 - BWI76_RS23645 0.32 +0.2
4,934,451 - BWI76_RS23645 0.32 +0.2
4,934,451 - BWI76_RS23645 0.32 -0.3
4,934,453 + BWI76_RS23645 0.32 -1.2
4,934,453 + BWI76_RS23645 0.32 +0.1
4,934,453 + BWI76_RS23645 0.32 -0.2
4,934,453 + BWI76_RS23645 0.32 -0.2
4,934,453 + BWI76_RS23645 0.32 +0.7
4,934,453 + BWI76_RS23645 0.32 +0.1
4,934,453 + BWI76_RS23645 0.32 +1.4
4,934,453 + BWI76_RS23645 0.32 +0.2
4,934,453 + BWI76_RS23645 0.32 +0.6
4,934,453 + BWI76_RS23645 0.32 -0.8
4,934,456 - BWI76_RS23645 0.32 +0.7
4,934,458 + BWI76_RS23645 0.32 +0.4
4,934,458 - BWI76_RS23645 0.32 +2.5
4,934,458 - BWI76_RS23645 0.32 +0.4
4,934,458 - BWI76_RS23645 0.32 +0.2
4,934,458 - BWI76_RS23645 0.32 +1.4
4,934,458 - BWI76_RS23645 0.32 +2.3
4,934,461 + BWI76_RS23645 0.33 +0.1
4,934,461 - BWI76_RS23645 0.33 +0.1
4,934,461 - BWI76_RS23645 0.33 +1.0
4,934,461 - BWI76_RS23645 0.33 -0.9
4,934,461 - -0.0
4,934,461 - BWI76_RS23645 0.33 +0.7
4,934,461 - BWI76_RS23645 0.33 -1.0
4,934,461 - BWI76_RS23645 0.33 -0.9
4,934,461 - BWI76_RS23645 0.33 +0.8
4,934,461 - BWI76_RS23645 0.33 +0.2
4,934,461 - BWI76_RS23645 0.33 -1.7
4,934,461 - BWI76_RS23645 0.33 -2.7
4,934,461 - BWI76_RS23645 0.33 -2.7
4,934,461 - BWI76_RS23645 0.33 -1.9
4,934,461 - BWI76_RS23645 0.33 -0.7
4,934,461 - BWI76_RS23645 0.33 -0.9
4,934,466 - BWI76_RS23645 0.33 -1.3
4,934,479 + BWI76_RS23645 0.34 +0.1
4,934,545 + BWI76_RS23645 0.39 -0.7
4,934,548 + BWI76_RS23645 0.39 +0.6
4,934,556 - BWI76_RS23645 0.39 -1.2
4,934,558 + BWI76_RS23645 0.40 +1.2
4,934,558 + BWI76_RS23645 0.40 -0.5
4,934,558 + BWI76_RS23645 0.40 +0.3
4,934,558 + BWI76_RS23645 0.40 +0.4
4,934,566 - BWI76_RS23645 0.40 -0.8
4,934,566 - BWI76_RS23645 0.40 +0.8
4,934,566 - BWI76_RS23645 0.40 -1.3
4,934,566 - BWI76_RS23645 0.40 -1.7
4,934,576 - BWI76_RS23645 0.41 -1.0
4,934,587 - BWI76_RS23645 0.42 -0.2
4,934,621 - BWI76_RS23645 0.44 -1.2
4,934,621 - BWI76_RS23645 0.44 +0.7
4,934,634 + BWI76_RS23645 0.45 -1.0
4,934,642 + BWI76_RS23645 0.45 -1.0
4,934,682 + BWI76_RS23645 0.48 +1.1
4,934,683 + BWI76_RS23645 0.48 +0.1
4,934,683 + BWI76_RS23645 0.48 +0.8
4,934,683 + BWI76_RS23645 0.48 -0.4
4,934,683 + BWI76_RS23645 0.48 -1.0
4,934,690 - BWI76_RS23645 0.49 -0.1
4,934,690 - BWI76_RS23645 0.49 -1.5
4,934,691 - BWI76_RS23645 0.49 +0.3
4,934,691 - BWI76_RS23645 0.49 -0.0
4,934,691 - BWI76_RS23645 0.49 -0.1
4,934,691 - BWI76_RS23645 0.49 -0.3
4,934,693 + BWI76_RS23645 0.49 +0.0
4,934,693 - BWI76_RS23645 0.49 -1.5
4,934,693 - BWI76_RS23645 0.49 +1.0
4,934,733 + BWI76_RS23645 0.52 -0.8
4,934,738 + BWI76_RS23645 0.52 +1.1
4,934,738 + BWI76_RS23645 0.52 +0.6
4,934,738 + +1.0
4,934,738 + BWI76_RS23645 0.52 +1.2
4,934,746 - BWI76_RS23645 0.53 -1.2
4,934,805 + BWI76_RS23645 0.57 -0.1
4,934,856 - BWI76_RS23645 0.61 +0.4
4,934,866 - BWI76_RS23645 0.61 -0.2
4,934,993 + BWI76_RS23645 0.70 +0.6
4,935,018 + BWI76_RS23645 0.72 -0.3
4,935,023 + BWI76_RS23645 0.72 +0.5
4,935,031 - BWI76_RS23645 0.73 -0.2
4,935,074 - BWI76_RS23645 0.76 +1.2
4,935,136 - BWI76_RS23645 0.80 -1.1
4,935,203 - BWI76_RS23645 0.85 +0.0
4,935,253 + BWI76_RS23645 0.89 +0.3
4,935,253 + BWI76_RS23645 0.89 +0.0
4,935,296 + -0.4
4,935,296 + +0.5
4,935,304 - +0.6
4,935,408 + +1.3
4,935,416 - -0.6
4,935,416 - +0.5
4,935,416 - -0.4
4,935,418 + +0.8
4,935,418 + -0.5
4,935,418 + -0.0
4,935,418 + -0.3
4,935,418 + +2.0
4,935,419 + -0.0
4,935,425 + +2.0
4,935,426 - -1.1
4,935,426 - +0.3
4,935,426 - +0.9
4,935,426 - +0.2
4,935,504 + -0.5
4,935,582 - -2.4
4,935,612 + BWI76_RS23650 0.12 -1.7
4,935,630 - BWI76_RS23650 0.13 -0.1
4,935,631 - BWI76_RS23650 0.13 +0.3
4,935,697 + BWI76_RS23650 0.17 +0.6
4,935,721 + BWI76_RS23650 0.19 +1.0
4,935,721 + BWI76_RS23650 0.19 -0.0
4,935,721 + BWI76_RS23650 0.19 +1.7
4,935,721 + BWI76_RS23650 0.19 -1.0
4,935,775 + BWI76_RS23650 0.22 +0.7
4,935,918 + BWI76_RS23650 0.32 +0.5
4,935,923 + BWI76_RS23650 0.32 +0.7
4,935,963 - BWI76_RS23650 0.35 +0.4
4,935,990 + BWI76_RS23650 0.36 +1.8
4,936,010 - BWI76_RS23650 0.38 -0.2
4,936,043 - BWI76_RS23650 0.40 -1.2
4,936,093 + BWI76_RS23650 0.43 +1.5
4,936,101 - BWI76_RS23650 0.43 +1.7
4,936,149 + BWI76_RS23650 0.47 +0.3
4,936,157 - BWI76_RS23650 0.47 +2.4
4,936,157 - +0.7
4,936,157 - BWI76_RS23650 0.47 +0.3
4,936,157 - BWI76_RS23650 0.47 -0.2
4,936,380 + BWI76_RS23650 0.61 -1.9
4,936,511 - BWI76_RS23650 0.70 +3.7
4,936,582 - BWI76_RS23650 0.75 -0.2
4,936,710 + BWI76_RS23650 0.83 +3.3
4,936,783 + BWI76_RS23650 0.88 -0.6
4,936,849 + +0.7
4,936,882 - +0.1
4,936,969 - +0.1
4,936,985 + -0.2
4,937,187 - BWI76_RS23655 0.13 -0.9
4,937,187 - BWI76_RS23655 0.13 +0.0
4,937,221 + BWI76_RS23655 0.17 -0.1
4,937,656 + BWI76_RS23655 0.73 +0.0
4,937,664 - BWI76_RS23655 0.74 +0.5
4,937,713 - BWI76_RS23655 0.81 -0.0
4,937,945 + -1.0

Or see this region's nucleotide sequence