Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS22320 and BWI76_RS22325 are separated by 17 nucleotides BWI76_RS22325 and BWI76_RS22330 are separated by 2 nucleotides
BWI76_RS22320: BWI76_RS22320 - hydrogenase 3 large subunit, at 4,652,151 to 4,653,860
_RS22320
BWI76_RS22325: BWI76_RS22325 - hydrogenase 3 membrane subunit, at 4,653,878 to 4,654,801
_RS22325
BWI76_RS22330: BWI76_RS22330 - formate hydrogenlyase subunit 3, at 4,654,804 to 4,656,630
_RS22330
Position (kb)
4653
4654
4655 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 4652.884 kb on - strand, within BWI76_RS22320 at 4652.932 kb on - strand, within BWI76_RS22320 at 4653.168 kb on + strand, within BWI76_RS22320 at 4653.222 kb on - strand, within BWI76_RS22320 at 4653.289 kb on + strand, within BWI76_RS22320 at 4653.314 kb on + strand, within BWI76_RS22320 at 4653.327 kb on - strand, within BWI76_RS22320 at 4653.353 kb on + strand, within BWI76_RS22320 at 4653.581 kb on + strand, within BWI76_RS22320 at 4653.607 kb on + strand, within BWI76_RS22320 at 4653.779 kb on + strand at 4653.956 kb on - strand at 4654.110 kb on + strand, within BWI76_RS22325 at 4654.128 kb on - strand, within BWI76_RS22325 at 4654.312 kb on - strand, within BWI76_RS22325 at 4654.328 kb on + strand, within BWI76_RS22325 at 4654.367 kb on - strand, within BWI76_RS22325 at 4654.576 kb on + strand, within BWI76_RS22325 at 4654.862 kb on + strand at 4655.163 kb on - strand, within BWI76_RS22330 at 4655.294 kb on - strand, within BWI76_RS22330 at 4655.321 kb on - strand, within BWI76_RS22330 at 4655.682 kb on - strand, within BWI76_RS22330
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x remove 4,652,884 - BWI76_RS22320 0.43 -2.1 4,652,932 - BWI76_RS22320 0.46 -1.6 4,653,168 + BWI76_RS22320 0.59 +0.2 4,653,222 - BWI76_RS22320 0.63 -0.2 4,653,289 + BWI76_RS22320 0.67 +0.9 4,653,314 + BWI76_RS22320 0.68 +0.6 4,653,327 - BWI76_RS22320 0.69 +0.3 4,653,353 + BWI76_RS22320 0.70 -0.4 4,653,581 + BWI76_RS22320 0.84 -0.1 4,653,607 + BWI76_RS22320 0.85 -0.4 4,653,779 + -0.7 4,653,956 - -0.4 4,654,110 + BWI76_RS22325 0.25 +0.4 4,654,128 - BWI76_RS22325 0.27 +0.5 4,654,312 - BWI76_RS22325 0.47 +0.2 4,654,328 + BWI76_RS22325 0.49 -0.9 4,654,367 - BWI76_RS22325 0.53 -1.1 4,654,576 + BWI76_RS22325 0.76 +3.8 4,654,862 + +0.1 4,655,163 - BWI76_RS22330 0.20 -0.5 4,655,294 - BWI76_RS22330 0.27 +1.1 4,655,321 - BWI76_RS22330 0.28 -0.6 4,655,682 - BWI76_RS22330 0.48 +1.8
Or see this region's nucleotide sequence