Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS22250 and BWI76_RS22255 overlap by 1 nucleotides BWI76_RS22255 and BWI76_RS22260 are separated by 95 nucleotides BWI76_RS22260 and BWI76_RS22265 overlap by 4 nucleotides
BWI76_RS22250: BWI76_RS22250 - nitric oxide reductase transcription regulator, at 4,637,090 to 4,638,634
_RS22250
BWI76_RS22255: BWI76_RS22255 - transcriptional regulator, at 4,638,634 to 4,638,726
_RS22255
BWI76_RS22260: BWI76_RS22260 - anaerobic nitric oxide reductase flavorubredoxin, at 4,638,822 to 4,640,267
_RS22260
BWI76_RS22265: BWI76_RS22265 - NADH:flavorubredoxin oxidoreductase, at 4,640,264 to 4,641,397
_RS22265
Position (kb)
4638
4639
4640
4641 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 4637.886 kb on + strand, within BWI76_RS22250 at 4638.004 kb on + strand, within BWI76_RS22250 at 4638.077 kb on + strand, within BWI76_RS22250 at 4638.102 kb on + strand, within BWI76_RS22250 at 4638.119 kb on - strand, within BWI76_RS22250 at 4638.169 kb on - strand, within BWI76_RS22250 at 4638.216 kb on - strand, within BWI76_RS22250 at 4638.235 kb on - strand, within BWI76_RS22250 at 4638.260 kb on + strand, within BWI76_RS22250 at 4638.458 kb on - strand, within BWI76_RS22250 at 4638.543 kb on + strand at 4638.858 kb on + strand at 4638.876 kb on - strand at 4638.900 kb on - strand at 4639.181 kb on - strand, within BWI76_RS22260 at 4639.302 kb on + strand, within BWI76_RS22260 at 4639.339 kb on - strand, within BWI76_RS22260 at 4639.339 kb on - strand, within BWI76_RS22260 at 4639.405 kb on - strand, within BWI76_RS22260 at 4639.667 kb on - strand, within BWI76_RS22260 at 4639.897 kb on - strand, within BWI76_RS22260 at 4639.955 kb on + strand, within BWI76_RS22260 at 4640.399 kb on - strand, within BWI76_RS22265 at 4640.663 kb on + strand, within BWI76_RS22265 at 4640.894 kb on - strand, within BWI76_RS22265
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x remove 4,637,886 + BWI76_RS22250 0.52 +0.6 4,638,004 + BWI76_RS22250 0.59 +0.8 4,638,077 + BWI76_RS22250 0.64 -0.6 4,638,102 + BWI76_RS22250 0.66 +0.3 4,638,119 - BWI76_RS22250 0.67 +0.4 4,638,169 - BWI76_RS22250 0.70 +0.1 4,638,216 - BWI76_RS22250 0.73 -0.6 4,638,235 - BWI76_RS22250 0.74 +0.8 4,638,260 + BWI76_RS22250 0.76 +1.3 4,638,458 - BWI76_RS22250 0.89 +0.1 4,638,543 + +3.5 4,638,858 + -0.4 4,638,876 - -0.7 4,638,900 - -1.5 4,639,181 - BWI76_RS22260 0.25 -0.5 4,639,302 + BWI76_RS22260 0.33 -0.1 4,639,339 - BWI76_RS22260 0.36 -0.5 4,639,339 - BWI76_RS22260 0.36 +0.1 4,639,405 - BWI76_RS22260 0.40 -1.0 4,639,667 - BWI76_RS22260 0.58 -2.1 4,639,897 - BWI76_RS22260 0.74 +0.6 4,639,955 + BWI76_RS22260 0.78 -1.6 4,640,399 - BWI76_RS22265 0.12 -0.0 4,640,663 + BWI76_RS22265 0.35 -0.5 4,640,894 - BWI76_RS22265 0.56 -0.2
Or see this region's nucleotide sequence