Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS21935 and BWI76_RS21940 are separated by 64 nucleotides BWI76_RS21940 and BWI76_RS21945 are separated by 144 nucleotides BWI76_RS21945 and BWI76_RS21950 are separated by 39 nucleotides BWI76_RS21950 and BWI76_RS21955 are separated by 35 nucleotides
BWI76_RS21935: BWI76_RS21935 - MFS transporter, at 4,582,309 to 4,583,502
_RS21935
BWI76_RS21940: BWI76_RS21940 - SDR family oxidoreductase, at 4,583,567 to 4,584,343
_RS21940
BWI76_RS21945: BWI76_RS21945 - LysR family transcriptional regulator, at 4,584,488 to 4,585,408
_RS21945
BWI76_RS21950: BWI76_RS21950 - prephenate dehydratase/arogenate dehydratase, at 4,585,448 to 4,586,221
_RS21950
BWI76_RS21955: BWI76_RS21955 - transferase, at 4,586,257 to 4,587,051
_RS21955
Position (kb) 4584
4585
4586 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4583.652 kb on + strand at 4583.857 kb on - strand, within BWI76_RS21940 at 4583.974 kb on - strand, within BWI76_RS21940 at 4584.116 kb on - strand, within BWI76_RS21940 at 4584.350 kb on + strand at 4584.376 kb on + strand at 4584.386 kb on + strand at 4584.389 kb on - strand at 4584.394 kb on - strand at 4584.394 kb on - strand at 4584.614 kb on + strand, within BWI76_RS21945 at 4584.730 kb on + strand at 4584.738 kb on - strand, within BWI76_RS21945 at 4585.201 kb on - strand, within BWI76_RS21945 at 4585.327 kb on + strand at 4585.575 kb on - strand, within BWI76_RS21950 at 4585.575 kb on - strand, within BWI76_RS21950 at 4585.613 kb on + strand, within BWI76_RS21950 at 4585.613 kb on + strand, within BWI76_RS21950 at 4585.655 kb on - strand, within BWI76_RS21950 at 4585.695 kb on + strand, within BWI76_RS21950 at 4585.703 kb on + strand, within BWI76_RS21950 at 4585.781 kb on - strand, within BWI76_RS21950 at 4585.927 kb on + strand, within BWI76_RS21950 at 4585.982 kb on - strand, within BWI76_RS21950 at 4586.011 kb on + strand, within BWI76_RS21950 at 4586.019 kb on - strand, within BWI76_RS21950 at 4586.019 kb on - strand, within BWI76_RS21950 at 4586.019 kb on - strand, within BWI76_RS21950 at 4586.056 kb on - strand, within BWI76_RS21950 at 4586.309 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x remove 4,583,652 + +0.6 4,583,857 - BWI76_RS21940 0.37 +0.6 4,583,974 - BWI76_RS21940 0.52 -0.7 4,584,116 - BWI76_RS21940 0.71 +2.2 4,584,350 + -0.6 4,584,376 + +0.3 4,584,386 + +1.9 4,584,389 - +0.3 4,584,394 - -0.2 4,584,394 - +0.1 4,584,614 + BWI76_RS21945 0.14 +2.3 4,584,730 + +1.9 4,584,738 - BWI76_RS21945 0.27 +0.5 4,585,201 - BWI76_RS21945 0.77 -2.5 4,585,327 + +1.9 4,585,575 - BWI76_RS21950 0.16 -0.7 4,585,575 - BWI76_RS21950 0.16 -0.4 4,585,613 + BWI76_RS21950 0.21 +0.5 4,585,613 + BWI76_RS21950 0.21 -1.4 4,585,655 - BWI76_RS21950 0.27 +1.2 4,585,695 + BWI76_RS21950 0.32 -0.1 4,585,703 + BWI76_RS21950 0.33 -0.7 4,585,781 - BWI76_RS21950 0.43 +0.1 4,585,927 + BWI76_RS21950 0.62 -0.5 4,585,982 - BWI76_RS21950 0.69 -0.0 4,586,011 + BWI76_RS21950 0.73 +0.3 4,586,019 - BWI76_RS21950 0.74 -0.4 4,586,019 - BWI76_RS21950 0.74 -0.2 4,586,019 - BWI76_RS21950 0.74 -0.2 4,586,056 - BWI76_RS21950 0.79 +0.7 4,586,309 - -3.2
Or see this region's nucleotide sequence