Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS20985 and BWI76_RS20990 are separated by 3 nucleotides BWI76_RS20990 and BWI76_RS20995 are separated by 177 nucleotides
BWI76_RS20985: BWI76_RS20985 - glycosyl hydrolase family protein, at 4,387,299 to 4,388,396
_RS20985
BWI76_RS20990: BWI76_RS20990 - hypothetical protein, at 4,388,400 to 4,390,073
_RS20990
BWI76_RS20995: BWI76_RS20995 - RNA degradosome polyphosphate kinase, at 4,390,251 to 4,392,311
_RS20995
Position (kb) 4388
4389
4390
4391 Strain fitness (log2 ratio) -1
0
1
2
3
4
5
6
7 at 4387.486 kb on + strand, within BWI76_RS20985 at 4387.486 kb on + strand, within BWI76_RS20985 at 4387.494 kb on - strand, within BWI76_RS20985 at 4387.650 kb on + strand, within BWI76_RS20985 at 4387.797 kb on - strand, within BWI76_RS20985 at 4387.965 kb on - strand, within BWI76_RS20985 at 4388.299 kb on + strand at 4388.376 kb on + strand at 4388.384 kb on - strand at 4388.384 kb on - strand at 4388.643 kb on - strand, within BWI76_RS20990 at 4388.645 kb on + strand, within BWI76_RS20990 at 4388.841 kb on + strand, within BWI76_RS20990 at 4388.843 kb on - strand, within BWI76_RS20990 at 4389.159 kb on - strand, within BWI76_RS20990 at 4389.189 kb on - strand, within BWI76_RS20990 at 4389.225 kb on + strand, within BWI76_RS20990 at 4389.326 kb on + strand, within BWI76_RS20990 at 4389.339 kb on - strand, within BWI76_RS20990 at 4389.339 kb on - strand, within BWI76_RS20990 at 4389.526 kb on - strand, within BWI76_RS20990 at 4389.743 kb on - strand, within BWI76_RS20990 at 4389.843 kb on - strand, within BWI76_RS20990 at 4389.843 kb on - strand, within BWI76_RS20990 at 4389.860 kb on + strand, within BWI76_RS20990 at 4389.868 kb on - strand, within BWI76_RS20990 at 4389.923 kb on + strand at 4389.931 kb on + strand at 4389.974 kb on + strand at 4389.997 kb on + strand at 4390.000 kb on - strand at 4390.049 kb on + strand at 4390.231 kb on - strand at 4390.241 kb on - strand at 4390.246 kb on - strand at 4390.246 kb on - strand at 4390.446 kb on + strand at 4390.446 kb on + strand at 4390.476 kb on - strand, within BWI76_RS20995 at 4390.617 kb on - strand, within BWI76_RS20995 at 4391.043 kb on - strand, within BWI76_RS20995
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x remove 4,387,486 + BWI76_RS20985 0.17 +1.9 4,387,486 + BWI76_RS20985 0.17 +1.1 4,387,494 - BWI76_RS20985 0.18 +0.3 4,387,650 + BWI76_RS20985 0.32 +0.1 4,387,797 - BWI76_RS20985 0.45 -0.3 4,387,965 - BWI76_RS20985 0.61 +0.3 4,388,299 + +0.3 4,388,376 + +0.4 4,388,384 - +1.3 4,388,384 - +0.9 4,388,643 - BWI76_RS20990 0.15 +0.3 4,388,645 + BWI76_RS20990 0.15 +0.4 4,388,841 + BWI76_RS20990 0.26 -0.1 4,388,843 - BWI76_RS20990 0.26 -0.8 4,389,159 - BWI76_RS20990 0.45 -0.3 4,389,189 - BWI76_RS20990 0.47 +1.9 4,389,225 + BWI76_RS20990 0.49 +0.1 4,389,326 + BWI76_RS20990 0.55 -0.9 4,389,339 - BWI76_RS20990 0.56 +0.4 4,389,339 - BWI76_RS20990 0.56 -0.2 4,389,526 - BWI76_RS20990 0.67 +0.5 4,389,743 - BWI76_RS20990 0.80 -0.6 4,389,843 - BWI76_RS20990 0.86 -0.6 4,389,843 - BWI76_RS20990 0.86 +0.8 4,389,860 + BWI76_RS20990 0.87 +0.3 4,389,868 - BWI76_RS20990 0.88 +2.1 4,389,923 + +0.1 4,389,931 + -0.5 4,389,974 + +1.4 4,389,997 + +0.7 4,390,000 - -1.3 4,390,049 + -0.7 4,390,231 - +5.9 4,390,241 - +5.6 4,390,246 - +6.3 4,390,246 - +6.0 4,390,446 + +5.8 4,390,446 + +5.6 4,390,476 - BWI76_RS20995 0.11 +5.9 4,390,617 - BWI76_RS20995 0.18 +7.5 4,391,043 - BWI76_RS20995 0.38 +6.0
Or see this region's nucleotide sequence