Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS19340 and BWI76_RS19345 are separated by 9 nucleotides BWI76_RS19345 and BWI76_RS19350 are separated by 206 nucleotides
BWI76_RS19340: BWI76_RS19340 - xylulokinase, at 4,029,434 to 4,030,897
_RS19340
BWI76_RS19345: BWI76_RS19345 - D-arabinitol 4-dehydrogenase, at 4,030,907 to 4,032,274
_RS19345
BWI76_RS19350: BWI76_RS19350 - DeoR family transcriptional regulator, at 4,032,481 to 4,033,422
_RS19350
Position (kb)
4030
4031
4032
4033 Strain fitness (log2 ratio)
-1
0
1
2 at 4029.915 kb on + strand, within BWI76_RS19340 at 4030.277 kb on + strand, within BWI76_RS19340 at 4030.302 kb on - strand, within BWI76_RS19340 at 4030.325 kb on - strand, within BWI76_RS19340 at 4030.380 kb on - strand, within BWI76_RS19340 at 4030.467 kb on - strand, within BWI76_RS19340 at 4030.729 kb on - strand, within BWI76_RS19340 at 4030.771 kb on + strand at 4031.063 kb on - strand, within BWI76_RS19345 at 4031.247 kb on - strand, within BWI76_RS19345 at 4031.292 kb on - strand, within BWI76_RS19345 at 4031.377 kb on - strand, within BWI76_RS19345 at 4031.391 kb on - strand, within BWI76_RS19345 at 4031.779 kb on + strand, within BWI76_RS19345 at 4031.975 kb on - strand, within BWI76_RS19345 at 4032.236 kb on + strand at 4033.038 kb on - strand, within BWI76_RS19350
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x remove 4,029,915 + BWI76_RS19340 0.33 -0.3 4,030,277 + BWI76_RS19340 0.58 +0.0 4,030,302 - BWI76_RS19340 0.59 -0.9 4,030,325 - BWI76_RS19340 0.61 -0.1 4,030,380 - BWI76_RS19340 0.65 -0.4 4,030,467 - BWI76_RS19340 0.71 +0.4 4,030,729 - BWI76_RS19340 0.88 -0.1 4,030,771 + +0.1 4,031,063 - BWI76_RS19345 0.11 -1.1 4,031,247 - BWI76_RS19345 0.25 -0.2 4,031,292 - BWI76_RS19345 0.28 -0.8 4,031,377 - BWI76_RS19345 0.34 +0.1 4,031,391 - BWI76_RS19345 0.35 -1.0 4,031,779 + BWI76_RS19345 0.64 -1.1 4,031,975 - BWI76_RS19345 0.78 -0.0 4,032,236 + +1.9 4,033,038 - BWI76_RS19350 0.59 +0.7
Or see this region's nucleotide sequence