Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS19330 and BWI76_RS19335 are separated by 48 nucleotides BWI76_RS19335 and BWI76_RS19340 are separated by 68 nucleotides
BWI76_RS19330: BWI76_RS19330 - HAD family hydrolase, at 4,027,377 to 4,028,039
_RS19330
BWI76_RS19335: BWI76_RS19335 - MFS transporter, at 4,028,088 to 4,029,365
_RS19335
BWI76_RS19340: BWI76_RS19340 - xylulokinase, at 4,029,434 to 4,030,897
_RS19340
Position (kb)
4028
4029
4030 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4027.948 kb on - strand, within BWI76_RS19330 at 4028.218 kb on + strand, within BWI76_RS19335 at 4028.603 kb on - strand, within BWI76_RS19335 at 4028.637 kb on + strand, within BWI76_RS19335 at 4028.643 kb on - strand, within BWI76_RS19335 at 4028.698 kb on + strand, within BWI76_RS19335 at 4028.698 kb on + strand, within BWI76_RS19335 at 4028.698 kb on + strand, within BWI76_RS19335 at 4028.706 kb on - strand, within BWI76_RS19335 at 4028.706 kb on - strand, within BWI76_RS19335 at 4028.706 kb on - strand, within BWI76_RS19335 at 4028.878 kb on - strand, within BWI76_RS19335 at 4028.900 kb on + strand, within BWI76_RS19335 at 4029.173 kb on - strand, within BWI76_RS19335 at 4029.389 kb on - strand at 4029.795 kb on + strand, within BWI76_RS19340 at 4029.915 kb on + strand, within BWI76_RS19340 at 4030.277 kb on + strand, within BWI76_RS19340 at 4030.302 kb on - strand, within BWI76_RS19340 at 4030.325 kb on - strand, within BWI76_RS19340
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x remove 4,027,948 - BWI76_RS19330 0.86 +1.3 4,028,218 + BWI76_RS19335 0.10 -1.7 4,028,603 - BWI76_RS19335 0.40 -0.5 4,028,637 + BWI76_RS19335 0.43 -0.0 4,028,643 - BWI76_RS19335 0.43 -1.4 4,028,698 + BWI76_RS19335 0.48 +0.1 4,028,698 + BWI76_RS19335 0.48 -1.3 4,028,698 + BWI76_RS19335 0.48 +0.4 4,028,706 - BWI76_RS19335 0.48 +0.4 4,028,706 - BWI76_RS19335 0.48 -0.0 4,028,706 - BWI76_RS19335 0.48 -1.0 4,028,878 - BWI76_RS19335 0.62 -0.8 4,028,900 + BWI76_RS19335 0.64 -1.8 4,029,173 - BWI76_RS19335 0.85 -1.1 4,029,389 - +2.3 4,029,795 + BWI76_RS19340 0.25 -0.5 4,029,915 + BWI76_RS19340 0.33 -0.3 4,030,277 + BWI76_RS19340 0.58 +0.0 4,030,302 - BWI76_RS19340 0.59 -0.9 4,030,325 - BWI76_RS19340 0.61 -0.1
Or see this region's nucleotide sequence