Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS17655 and BWI76_RS17660 are separated by 94 nucleotides BWI76_RS17660 and BWI76_RS17665 overlap by 16 nucleotides BWI76_RS17665 and BWI76_RS17670 are separated by 18 nucleotides BWI76_RS17670 and BWI76_RS17675 overlap by 4 nucleotides
BWI76_RS17655: BWI76_RS17655 - MFS transporter, at 3,667,503 to 3,668,642
_RS17655
BWI76_RS17660: BWI76_RS17660 - AraC/XylS familytranscription regulator, at 3,668,737 to 3,669,504
_RS17660
BWI76_RS17665: BWI76_RS17665 - proteasome-type protease, at 3,669,489 to 3,670,241
_RS17665
BWI76_RS17670: BWI76_RS17670 - transglutaminase, at 3,670,260 to 3,671,075
_RS17670
BWI76_RS17675: BWI76_RS17675 - hypothetical protein, at 3,671,072 to 3,672,001
_RS17675
Position (kb)
3669
3670
3671 Strain fitness (log2 ratio)
-1
0
1
2
3
4 at 3668.671 kb on + strand at 3668.946 kb on - strand at 3669.018 kb on + strand, within BWI76_RS17660 at 3669.057 kb on - strand, within BWI76_RS17660 at 3669.751 kb on + strand, within BWI76_RS17665 at 3669.899 kb on - strand, within BWI76_RS17665 at 3670.295 kb on + strand at 3670.295 kb on + strand at 3670.366 kb on - strand, within BWI76_RS17670 at 3670.908 kb on + strand, within BWI76_RS17670 at 3670.950 kb on + strand, within BWI76_RS17670 at 3671.105 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x remove 3,668,671 + -0.3 3,668,946 - +0.8 3,669,018 + BWI76_RS17660 0.37 +0.9 3,669,057 - BWI76_RS17660 0.42 +1.1 3,669,751 + BWI76_RS17665 0.35 +1.9 3,669,899 - BWI76_RS17665 0.54 +2.4 3,670,295 + +0.8 3,670,295 + +4.0 3,670,366 - BWI76_RS17670 0.13 +0.1 3,670,908 + BWI76_RS17670 0.79 +0.4 3,670,950 + BWI76_RS17670 0.85 +0.2 3,671,105 + +1.4
Or see this region's nucleotide sequence