Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS16885 and BWI76_RS16890 are separated by 33 nucleotides BWI76_RS16890 and BWI76_RS16895 are separated by 169 nucleotides BWI76_RS16895 and BWI76_RS16900 are separated by 74 nucleotides
BWI76_RS16885: BWI76_RS16885 - hypothetical protein, at 3,502,205 to 3,502,389
_RS16885
BWI76_RS16890: BWI76_RS16890 - hypothetical protein, at 3,502,423 to 3,503,157
_RS16890
BWI76_RS16895: BWI76_RS16895 - 3-(3-hydroxy-phenyl)propionate transporter MhpT, at 3,503,327 to 3,504,523
_RS16895
BWI76_RS16900: BWI76_RS16900 - 4-hydroxy-2-oxovalerate aldolase, at 3,504,598 to 3,505,614
_RS16900
Position (kb) 3503
3504
3505 Strain fitness (log2 ratio) -2
-1
0
1 at 3502.434 kb on + strand at 3502.831 kb on - strand, within BWI76_RS16890 at 3504.087 kb on + strand, within BWI76_RS16895 at 3504.221 kb on + strand, within BWI76_RS16895 at 3504.460 kb on + strand at 3504.836 kb on + strand, within BWI76_RS16900 at 3505.512 kb on - strand, within BWI76_RS16900
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x remove 3,502,434 + -0.4 3,502,831 - BWI76_RS16890 0.56 +0.1 3,504,087 + BWI76_RS16895 0.63 -2.6 3,504,221 + BWI76_RS16895 0.75 -0.9 3,504,460 + -1.4 3,504,836 + BWI76_RS16900 0.23 -0.0 3,505,512 - BWI76_RS16900 0.90 +0.3
Or see this region's nucleotide sequence