Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS16580 and BWI76_RS16585 are separated by 8 nucleotides BWI76_RS16585 and BWI76_RS16590 overlap by 4 nucleotides
BWI76_RS16580: BWI76_RS16580 - ubiquinol oxidase subunit II, at 3,434,038 to 3,435,048
_RS16580
BWI76_RS16585: BWI76_RS16585 - trehalose synthase, at 3,435,057 to 3,436,682
_RS16585
BWI76_RS16590: BWI76_RS16590 - short-chain dehydrogenase, at 3,436,679 to 3,437,668
_RS16590
Position (kb)
3435
3436
3437 Strain fitness (log2 ratio)
-1
0
1
2
3 at 3434.224 kb on - strand, within BWI76_RS16580 at 3434.417 kb on + strand, within BWI76_RS16580 at 3434.425 kb on - strand, within BWI76_RS16580 at 3434.464 kb on - strand, within BWI76_RS16580 at 3434.785 kb on - strand, within BWI76_RS16580 at 3434.796 kb on + strand, within BWI76_RS16580 at 3434.990 kb on - strand at 3435.161 kb on + strand at 3435.207 kb on + strand at 3435.265 kb on - strand, within BWI76_RS16585 at 3435.490 kb on + strand, within BWI76_RS16585 at 3435.671 kb on + strand, within BWI76_RS16585 at 3435.757 kb on - strand, within BWI76_RS16585 at 3435.930 kb on + strand, within BWI76_RS16585 at 3436.004 kb on - strand, within BWI76_RS16585 at 3436.112 kb on + strand, within BWI76_RS16585 at 3436.565 kb on - strand at 3436.971 kb on - strand, within BWI76_RS16590 at 3437.313 kb on + strand, within BWI76_RS16590 at 3437.617 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x remove 3,434,224 - BWI76_RS16580 0.18 -1.6 3,434,417 + BWI76_RS16580 0.37 +0.2 3,434,425 - BWI76_RS16580 0.38 +0.0 3,434,464 - BWI76_RS16580 0.42 -0.1 3,434,785 - BWI76_RS16580 0.74 -0.4 3,434,796 + BWI76_RS16580 0.75 -0.4 3,434,990 - +1.3 3,435,161 + +0.3 3,435,207 + +1.4 3,435,265 - BWI76_RS16585 0.13 +0.7 3,435,490 + BWI76_RS16585 0.27 -0.7 3,435,671 + BWI76_RS16585 0.38 -0.1 3,435,757 - BWI76_RS16585 0.43 +3.0 3,435,930 + BWI76_RS16585 0.54 -0.2 3,436,004 - BWI76_RS16585 0.58 +0.9 3,436,112 + BWI76_RS16585 0.65 +1.3 3,436,565 - +1.2 3,436,971 - BWI76_RS16590 0.29 +1.2 3,437,313 + BWI76_RS16590 0.64 -0.8 3,437,617 - -0.2
Or see this region's nucleotide sequence