Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS15660

Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS15655 and BWI76_RS15660 overlap by 14 nucleotidesBWI76_RS15660 and BWI76_RS15665 are separated by 31 nucleotidesBWI76_RS15665 and BWI76_RS15670 are separated by 274 nucleotides BWI76_RS15655: BWI76_RS15655 - hypothetical protein, at 3,271,852 to 3,273,330 _RS15655 BWI76_RS15660: BWI76_RS15660 - hypothetical protein, at 3,273,317 to 3,273,796 _RS15660 BWI76_RS15665: BWI76_RS15665 - hypothetical protein, at 3,273,828 to 3,274,475 _RS15665 BWI76_RS15670: BWI76_RS15670 - hypothetical protein, at 3,274,750 to 3,274,950 _RS15670 Position (kb) 3273 3274Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 3272.345 kb on - strand, within BWI76_RS15655at 3272.599 kb on - strand, within BWI76_RS15655at 3272.599 kb on - strand, within BWI76_RS15655at 3272.633 kb on - strand, within BWI76_RS15655at 3272.936 kb on + strand, within BWI76_RS15655at 3272.993 kb on + strand, within BWI76_RS15655at 3273.020 kb on - strand, within BWI76_RS15655at 3273.088 kb on + strand, within BWI76_RS15655at 3273.123 kb on + strand, within BWI76_RS15655at 3273.196 kb on + strandat 3273.209 kb on - strandat 3273.415 kb on + strand, within BWI76_RS15660at 3273.809 kb on + strandat 3273.817 kb on - strandat 3273.817 kb on - strandat 3273.867 kb on - strandat 3273.918 kb on - strand, within BWI76_RS15665at 3274.043 kb on - strand, within BWI76_RS15665at 3274.069 kb on + strand, within BWI76_RS15665at 3274.327 kb on + strand, within BWI76_RS15665at 3274.458 kb on + strandat 3274.487 kb on - strandat 3274.489 kb on - strandat 3274.494 kb on - strandat 3274.621 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x
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3,272,345 - BWI76_RS15655 0.33 -2.2
3,272,599 - BWI76_RS15655 0.51 -0.3
3,272,599 - BWI76_RS15655 0.51 -1.3
3,272,633 - BWI76_RS15655 0.53 +0.4
3,272,936 + BWI76_RS15655 0.73 -0.3
3,272,993 + BWI76_RS15655 0.77 -0.7
3,273,020 - BWI76_RS15655 0.79 -0.9
3,273,088 + BWI76_RS15655 0.84 -0.5
3,273,123 + BWI76_RS15655 0.86 -1.5
3,273,196 + -0.5
3,273,209 - -0.1
3,273,415 + BWI76_RS15660 0.20 -2.0
3,273,809 + +1.2
3,273,817 - -3.4
3,273,817 - +0.9
3,273,867 - +3.8
3,273,918 - BWI76_RS15665 0.14 -2.1
3,274,043 - BWI76_RS15665 0.33 -0.3
3,274,069 + BWI76_RS15665 0.37 +1.0
3,274,327 + BWI76_RS15665 0.77 -0.1
3,274,458 + -2.1
3,274,487 - -0.6
3,274,489 - +1.0
3,274,494 - -0.3
3,274,621 + +0.3

Or see this region's nucleotide sequence