Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS14920 and BWI76_RS14925 overlap by 4 nucleotides BWI76_RS14925 and BWI76_RS14930 are separated by 24 nucleotides
BWI76_RS14920: BWI76_RS14920 - ABC transporter permease, at 3,127,403 to 3,128,410
_RS14920
BWI76_RS14925: BWI76_RS14925 - ABC transporter substrate-binding protein, at 3,128,407 to 3,129,363
_RS14925
BWI76_RS14930: BWI76_RS14930 - hypothetical protein, at 3,129,388 to 3,130,197
_RS14930
Position (kb)
3128
3129
3130 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3127.426 kb on + strand at 3127.541 kb on - strand, within BWI76_RS14920 at 3127.616 kb on + strand, within BWI76_RS14920 at 3127.710 kb on - strand, within BWI76_RS14920 at 3127.763 kb on + strand, within BWI76_RS14920 at 3127.771 kb on - strand, within BWI76_RS14920 at 3127.777 kb on - strand, within BWI76_RS14920 at 3127.856 kb on + strand, within BWI76_RS14920 at 3128.045 kb on + strand, within BWI76_RS14920 at 3128.169 kb on - strand, within BWI76_RS14920 at 3128.190 kb on + strand, within BWI76_RS14920 at 3128.233 kb on - strand, within BWI76_RS14920 at 3128.385 kb on - strand at 3128.672 kb on - strand, within BWI76_RS14925 at 3128.743 kb on + strand, within BWI76_RS14925 at 3128.910 kb on - strand, within BWI76_RS14925 at 3128.915 kb on - strand, within BWI76_RS14925 at 3129.255 kb on + strand, within BWI76_RS14925 at 3129.288 kb on - strand at 3129.397 kb on + strand at 3129.607 kb on + strand, within BWI76_RS14930
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x remove 3,127,426 + +0.6 3,127,541 - BWI76_RS14920 0.14 +0.5 3,127,616 + BWI76_RS14920 0.21 -0.2 3,127,710 - BWI76_RS14920 0.30 +0.8 3,127,763 + BWI76_RS14920 0.36 -0.2 3,127,771 - BWI76_RS14920 0.37 +0.4 3,127,777 - BWI76_RS14920 0.37 +0.1 3,127,856 + BWI76_RS14920 0.45 -0.0 3,128,045 + BWI76_RS14920 0.64 +0.9 3,128,169 - BWI76_RS14920 0.76 +0.5 3,128,190 + BWI76_RS14920 0.78 -0.5 3,128,233 - BWI76_RS14920 0.82 +0.2 3,128,385 - +0.5 3,128,672 - BWI76_RS14925 0.28 +0.6 3,128,743 + BWI76_RS14925 0.35 +2.9 3,128,910 - BWI76_RS14925 0.53 +0.6 3,128,915 - BWI76_RS14925 0.53 +0.0 3,129,255 + BWI76_RS14925 0.89 -2.0 3,129,288 - +1.2 3,129,397 + -0.2 3,129,607 + BWI76_RS14930 0.27 +0.4
Or see this region's nucleotide sequence