Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS14740

Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS14730 and BWI76_RS14735 are separated by 112 nucleotidesBWI76_RS14735 and BWI76_RS14740 are separated by 73 nucleotidesBWI76_RS14740 and BWI76_RS14745 are separated by 96 nucleotides BWI76_RS14730: BWI76_RS14730 - 4-oxalocrotonate tautomerase, at 3,091,927 to 3,092,163 _RS14730 BWI76_RS14735: BWI76_RS14735 - type 11 methyltransferase, at 3,092,276 to 3,092,944 _RS14735 BWI76_RS14740: BWI76_RS14740 - LysR family transcriptional regulator, at 3,093,018 to 3,093,905 _RS14740 BWI76_RS14745: BWI76_RS14745 - NAD-dependent epimerase/dehydratase, at 3,094,002 to 3,095,057 _RS14745 Position (kb) 3093 3094Strain fitness (log2 ratio) -2 -1 0 1at 3092.064 kb on - strand, within BWI76_RS14730at 3092.066 kb on + strand, within BWI76_RS14730at 3092.068 kb on - strand, within BWI76_RS14730at 3092.081 kb on + strand, within BWI76_RS14730at 3092.112 kb on + strand, within BWI76_RS14730at 3092.120 kb on - strand, within BWI76_RS14730at 3092.217 kb on - strandat 3092.288 kb on + strandat 3092.296 kb on - strandat 3092.318 kb on - strandat 3092.610 kb on + strand, within BWI76_RS14735at 3092.753 kb on - strand, within BWI76_RS14735at 3092.782 kb on - strand, within BWI76_RS14735at 3093.271 kb on + strand, within BWI76_RS14740at 3093.381 kb on + strandat 3093.389 kb on - strand, within BWI76_RS14740at 3093.542 kb on - strand, within BWI76_RS14740at 3093.756 kb on - strand, within BWI76_RS14740at 3093.774 kb on - strand, within BWI76_RS14740at 3094.027 kb on - strandat 3094.181 kb on - strand, within BWI76_RS14745at 3094.231 kb on + strand, within BWI76_RS14745at 3094.233 kb on + strand, within BWI76_RS14745at 3094.333 kb on + strand, within BWI76_RS14745at 3094.341 kb on - strand, within BWI76_RS14745at 3094.341 kb on - strand, within BWI76_RS14745at 3094.440 kb on + strand, within BWI76_RS14745at 3094.484 kb on + strand, within BWI76_RS14745at 3094.612 kb on + strand, within BWI76_RS14745at 3094.625 kb on - strand, within BWI76_RS14745at 3094.636 kb on - strand, within BWI76_RS14745at 3094.747 kb on + strand, within BWI76_RS14745at 3094.785 kb on - strand, within BWI76_RS14745at 3094.795 kb on - strand, within BWI76_RS14745at 3094.813 kb on + strand, within BWI76_RS14745

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x
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3,092,064 - BWI76_RS14730 0.58 -0.1
3,092,066 + BWI76_RS14730 0.59 +0.2
3,092,068 - BWI76_RS14730 0.59 -0.8
3,092,081 + BWI76_RS14730 0.65 -0.6
3,092,112 + BWI76_RS14730 0.78 -0.5
3,092,120 - BWI76_RS14730 0.81 +0.5
3,092,217 - -0.1
3,092,288 + +0.0
3,092,296 - -0.6
3,092,318 - +0.8
3,092,610 + BWI76_RS14735 0.50 -0.5
3,092,753 - BWI76_RS14735 0.71 +0.6
3,092,782 - BWI76_RS14735 0.76 +1.4
3,093,271 + BWI76_RS14740 0.28 -1.7
3,093,381 + +1.7
3,093,389 - BWI76_RS14740 0.42 -0.5
3,093,542 - BWI76_RS14740 0.59 -2.7
3,093,756 - BWI76_RS14740 0.83 -2.3
3,093,774 - BWI76_RS14740 0.85 +0.4
3,094,027 - -0.3
3,094,181 - BWI76_RS14745 0.17 -1.7
3,094,231 + BWI76_RS14745 0.22 +0.1
3,094,233 + BWI76_RS14745 0.22 -0.7
3,094,333 + BWI76_RS14745 0.31 +1.0
3,094,341 - BWI76_RS14745 0.32 -2.1
3,094,341 - BWI76_RS14745 0.32 +0.3
3,094,440 + BWI76_RS14745 0.41 +0.3
3,094,484 + BWI76_RS14745 0.46 -2.7
3,094,612 + BWI76_RS14745 0.58 +0.3
3,094,625 - BWI76_RS14745 0.59 -0.2
3,094,636 - BWI76_RS14745 0.60 -0.2
3,094,747 + BWI76_RS14745 0.71 +0.7
3,094,785 - BWI76_RS14745 0.74 -0.4
3,094,795 - BWI76_RS14745 0.75 +0.3
3,094,813 + BWI76_RS14745 0.77 +0.7

Or see this region's nucleotide sequence