Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS14730 and BWI76_RS14735 are separated by 112 nucleotides BWI76_RS14735 and BWI76_RS14740 are separated by 73 nucleotides BWI76_RS14740 and BWI76_RS14745 are separated by 96 nucleotides
BWI76_RS14730: BWI76_RS14730 - 4-oxalocrotonate tautomerase, at 3,091,927 to 3,092,163
_RS14730
BWI76_RS14735: BWI76_RS14735 - type 11 methyltransferase, at 3,092,276 to 3,092,944
_RS14735
BWI76_RS14740: BWI76_RS14740 - LysR family transcriptional regulator, at 3,093,018 to 3,093,905
_RS14740
BWI76_RS14745: BWI76_RS14745 - NAD-dependent epimerase/dehydratase, at 3,094,002 to 3,095,057
_RS14745
Position (kb)
3093
3094 Strain fitness (log2 ratio)
-2
-1
0
1 at 3092.064 kb on - strand, within BWI76_RS14730 at 3092.066 kb on + strand, within BWI76_RS14730 at 3092.068 kb on - strand, within BWI76_RS14730 at 3092.081 kb on + strand, within BWI76_RS14730 at 3092.112 kb on + strand, within BWI76_RS14730 at 3092.120 kb on - strand, within BWI76_RS14730 at 3092.217 kb on - strand at 3092.288 kb on + strand at 3092.296 kb on - strand at 3092.318 kb on - strand at 3092.610 kb on + strand, within BWI76_RS14735 at 3092.753 kb on - strand, within BWI76_RS14735 at 3092.782 kb on - strand, within BWI76_RS14735 at 3093.271 kb on + strand, within BWI76_RS14740 at 3093.381 kb on + strand at 3093.389 kb on - strand, within BWI76_RS14740 at 3093.542 kb on - strand, within BWI76_RS14740 at 3093.756 kb on - strand, within BWI76_RS14740 at 3093.774 kb on - strand, within BWI76_RS14740 at 3094.027 kb on - strand at 3094.181 kb on - strand, within BWI76_RS14745 at 3094.231 kb on + strand, within BWI76_RS14745 at 3094.233 kb on + strand, within BWI76_RS14745 at 3094.333 kb on + strand, within BWI76_RS14745 at 3094.341 kb on - strand, within BWI76_RS14745 at 3094.341 kb on - strand, within BWI76_RS14745 at 3094.440 kb on + strand, within BWI76_RS14745 at 3094.484 kb on + strand, within BWI76_RS14745 at 3094.612 kb on + strand, within BWI76_RS14745 at 3094.625 kb on - strand, within BWI76_RS14745 at 3094.636 kb on - strand, within BWI76_RS14745 at 3094.747 kb on + strand, within BWI76_RS14745 at 3094.785 kb on - strand, within BWI76_RS14745 at 3094.795 kb on - strand, within BWI76_RS14745 at 3094.813 kb on + strand, within BWI76_RS14745
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x remove 3,092,064 - BWI76_RS14730 0.58 -0.1 3,092,066 + BWI76_RS14730 0.59 +0.2 3,092,068 - BWI76_RS14730 0.59 -0.8 3,092,081 + BWI76_RS14730 0.65 -0.6 3,092,112 + BWI76_RS14730 0.78 -0.5 3,092,120 - BWI76_RS14730 0.81 +0.5 3,092,217 - -0.1 3,092,288 + +0.0 3,092,296 - -0.6 3,092,318 - +0.8 3,092,610 + BWI76_RS14735 0.50 -0.5 3,092,753 - BWI76_RS14735 0.71 +0.6 3,092,782 - BWI76_RS14735 0.76 +1.4 3,093,271 + BWI76_RS14740 0.28 -1.7 3,093,381 + +1.7 3,093,389 - BWI76_RS14740 0.42 -0.5 3,093,542 - BWI76_RS14740 0.59 -2.7 3,093,756 - BWI76_RS14740 0.83 -2.3 3,093,774 - BWI76_RS14740 0.85 +0.4 3,094,027 - -0.3 3,094,181 - BWI76_RS14745 0.17 -1.7 3,094,231 + BWI76_RS14745 0.22 +0.1 3,094,233 + BWI76_RS14745 0.22 -0.7 3,094,333 + BWI76_RS14745 0.31 +1.0 3,094,341 - BWI76_RS14745 0.32 -2.1 3,094,341 - BWI76_RS14745 0.32 +0.3 3,094,440 + BWI76_RS14745 0.41 +0.3 3,094,484 + BWI76_RS14745 0.46 -2.7 3,094,612 + BWI76_RS14745 0.58 +0.3 3,094,625 - BWI76_RS14745 0.59 -0.2 3,094,636 - BWI76_RS14745 0.60 -0.2 3,094,747 + BWI76_RS14745 0.71 +0.7 3,094,785 - BWI76_RS14745 0.74 -0.4 3,094,795 - BWI76_RS14745 0.75 +0.3 3,094,813 + BWI76_RS14745 0.77 +0.7
Or see this region's nucleotide sequence