Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS13420

Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS13410 and BWI76_RS13415 are separated by 1 nucleotidesBWI76_RS13415 and BWI76_RS13420 overlap by 11 nucleotidesBWI76_RS13420 and BWI76_RS13425 are separated by 22 nucleotides BWI76_RS13410: BWI76_RS13410 - polyamine ABC transporter ATP-binding protein, at 2,797,268 to 2,798,278 _RS13410 BWI76_RS13415: BWI76_RS13415 - spermidine/putrescine ABC transporter permease, at 2,798,280 to 2,799,209 _RS13415 BWI76_RS13420: BWI76_RS13420 - ABC transporter permease, at 2,799,199 to 2,800,005 _RS13420 BWI76_RS13425: BWI76_RS13425 - 1-pyrroline dehydrogenase, at 2,800,028 to 2,801,455 _RS13425 Position (kb) 2799 2800 2801Strain fitness (log2 ratio) -2 -1 0 1at 2798.327 kb on + strandat 2798.475 kb on - strand, within BWI76_RS13415at 2798.596 kb on + strand, within BWI76_RS13415at 2798.604 kb on - strand, within BWI76_RS13415at 2798.693 kb on - strand, within BWI76_RS13415at 2799.088 kb on + strand, within BWI76_RS13415at 2799.296 kb on - strand, within BWI76_RS13420at 2799.351 kb on + strand, within BWI76_RS13420at 2800.018 kb on + strandat 2800.059 kb on - strandat 2800.147 kb on + strandat 2800.309 kb on - strand, within BWI76_RS13425at 2800.758 kb on + strand, within BWI76_RS13425at 2800.823 kb on - strand, within BWI76_RS13425at 2800.846 kb on + strand, within BWI76_RS13425at 2800.890 kb on - strand, within BWI76_RS13425

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x
remove
2,798,327 + -0.6
2,798,475 - BWI76_RS13415 0.21 +0.6
2,798,596 + BWI76_RS13415 0.34 +1.1
2,798,604 - BWI76_RS13415 0.35 +0.4
2,798,693 - BWI76_RS13415 0.44 +0.2
2,799,088 + BWI76_RS13415 0.87 +1.1
2,799,296 - BWI76_RS13420 0.12 -1.1
2,799,351 + BWI76_RS13420 0.19 +0.2
2,800,018 + -0.2
2,800,059 - -2.1
2,800,147 + -0.1
2,800,309 - BWI76_RS13425 0.20 +1.3
2,800,758 + BWI76_RS13425 0.51 +1.4
2,800,823 - BWI76_RS13425 0.56 +0.0
2,800,846 + BWI76_RS13425 0.57 +0.5
2,800,890 - BWI76_RS13425 0.60 +0.1

Or see this region's nucleotide sequence