Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS13410 and BWI76_RS13415 are separated by 1 nucleotides BWI76_RS13415 and BWI76_RS13420 overlap by 11 nucleotides BWI76_RS13420 and BWI76_RS13425 are separated by 22 nucleotides
BWI76_RS13410: BWI76_RS13410 - polyamine ABC transporter ATP-binding protein, at 2,797,268 to 2,798,278
_RS13410
BWI76_RS13415: BWI76_RS13415 - spermidine/putrescine ABC transporter permease, at 2,798,280 to 2,799,209
_RS13415
BWI76_RS13420: BWI76_RS13420 - ABC transporter permease, at 2,799,199 to 2,800,005
_RS13420
BWI76_RS13425: BWI76_RS13425 - 1-pyrroline dehydrogenase, at 2,800,028 to 2,801,455
_RS13425
Position (kb)
2799
2800
2801 Strain fitness (log2 ratio)
-2
-1
0
1 at 2798.327 kb on + strand at 2798.475 kb on - strand, within BWI76_RS13415 at 2798.596 kb on + strand, within BWI76_RS13415 at 2798.604 kb on - strand, within BWI76_RS13415 at 2798.693 kb on - strand, within BWI76_RS13415 at 2799.088 kb on + strand, within BWI76_RS13415 at 2799.296 kb on - strand, within BWI76_RS13420 at 2799.351 kb on + strand, within BWI76_RS13420 at 2800.018 kb on + strand at 2800.059 kb on - strand at 2800.147 kb on + strand at 2800.309 kb on - strand, within BWI76_RS13425 at 2800.758 kb on + strand, within BWI76_RS13425 at 2800.823 kb on - strand, within BWI76_RS13425 at 2800.846 kb on + strand, within BWI76_RS13425 at 2800.890 kb on - strand, within BWI76_RS13425
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x remove 2,798,327 + -0.6 2,798,475 - BWI76_RS13415 0.21 +0.6 2,798,596 + BWI76_RS13415 0.34 +1.1 2,798,604 - BWI76_RS13415 0.35 +0.4 2,798,693 - BWI76_RS13415 0.44 +0.2 2,799,088 + BWI76_RS13415 0.87 +1.1 2,799,296 - BWI76_RS13420 0.12 -1.1 2,799,351 + BWI76_RS13420 0.19 +0.2 2,800,018 + -0.2 2,800,059 - -2.1 2,800,147 + -0.1 2,800,309 - BWI76_RS13425 0.20 +1.3 2,800,758 + BWI76_RS13425 0.51 +1.4 2,800,823 - BWI76_RS13425 0.56 +0.0 2,800,846 + BWI76_RS13425 0.57 +0.5 2,800,890 - BWI76_RS13425 0.60 +0.1
Or see this region's nucleotide sequence