Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS11810 and BWI76_RS11815 are separated by 97 nucleotides BWI76_RS11815 and BWI76_RS11820 are separated by 214 nucleotides BWI76_RS11820 and BWI76_RS11825 are separated by 121 nucleotides
BWI76_RS11810: BWI76_RS11810 - outer membrane protein OmpW, at 2,484,371 to 2,485,009
_RS11810
BWI76_RS11815: BWI76_RS11815 - hypothetical protein, at 2,485,107 to 2,485,352
_RS11815
BWI76_RS11820: BWI76_RS11820 - short-chain dehydrogenase/reductase SDR, at 2,485,567 to 2,486,271
_RS11820
BWI76_RS11825: BWI76_RS11825 - LysR family transcriptional regulator, at 2,486,393 to 2,487,292
_RS11825
Position (kb)
2485
2486
2487 Strain fitness (log2 ratio)
-1
0
1
2 at 2484.588 kb on + strand, within BWI76_RS11810 at 2484.801 kb on + strand, within BWI76_RS11810 at 2485.030 kb on + strand at 2485.279 kb on + strand, within BWI76_RS11815 at 2485.498 kb on - strand at 2486.168 kb on + strand, within BWI76_RS11820 at 2486.215 kb on - strand at 2486.317 kb on + strand at 2486.328 kb on + strand at 2486.423 kb on + strand at 2486.545 kb on + strand, within BWI76_RS11825 at 2486.553 kb on - strand, within BWI76_RS11825 at 2486.633 kb on + strand, within BWI76_RS11825 at 2486.977 kb on + strand, within BWI76_RS11825
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x remove 2,484,588 + BWI76_RS11810 0.34 +0.4 2,484,801 + BWI76_RS11810 0.67 -0.1 2,485,030 + -0.1 2,485,279 + BWI76_RS11815 0.70 -0.5 2,485,498 - +1.0 2,486,168 + BWI76_RS11820 0.85 -0.9 2,486,215 - +2.5 2,486,317 + -1.2 2,486,328 + -0.9 2,486,423 + +0.3 2,486,545 + BWI76_RS11825 0.17 +0.8 2,486,553 - BWI76_RS11825 0.18 -0.9 2,486,633 + BWI76_RS11825 0.27 +0.0 2,486,977 + BWI76_RS11825 0.65 +0.4
Or see this region's nucleotide sequence