Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS11610

Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS11605 and BWI76_RS11610 are separated by 70 nucleotidesBWI76_RS11610 and BWI76_RS11615 overlap by 45 nucleotidesBWI76_RS11615 and BWI76_RS11620 are separated by 29 nucleotidesBWI76_RS11620 and BWI76_RS11625 are separated by 86 nucleotides BWI76_RS11605: BWI76_RS11605 - DNA topoisomerase III, at 2,442,026 to 2,443,981 _RS11605 BWI76_RS11610: BWI76_RS11610 - glutamate dehydrogenase, at 2,444,052 to 2,445,395 _RS11610 BWI76_RS11615: BWI76_RS11615 - hypothetical protein, at 2,445,351 to 2,445,548 _RS11615 BWI76_RS11620: BWI76_RS11620 - pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase, at 2,445,578 to 2,445,988 _RS11620 BWI76_RS11625: BWI76_RS11625 - membrane protein, at 2,446,075 to 2,446,692 _RS11625 Position (kb) 2444 2445 2446Strain fitness (log2 ratio) -2 -1 0 1at 2444.153 kb on - strandat 2444.284 kb on + strand, within BWI76_RS11610at 2444.439 kb on - strand, within BWI76_RS11610at 2444.464 kb on - strand, within BWI76_RS11610at 2445.215 kb on - strand, within BWI76_RS11610at 2445.384 kb on + strandat 2446.039 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x
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2,444,153 - -0.7
2,444,284 + BWI76_RS11610 0.17 -2.2
2,444,439 - BWI76_RS11610 0.29 +0.7
2,444,464 - BWI76_RS11610 0.31 -0.7
2,445,215 - BWI76_RS11610 0.87 -1.2
2,445,384 + +0.8
2,446,039 - -1.7

Or see this region's nucleotide sequence