Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS09960 and BWI76_RS09965 are separated by 185 nucleotides BWI76_RS09965 and BWI76_RS09970 are separated by 95 nucleotides BWI76_RS09970 and BWI76_RS09975 are separated by 353 nucleotides
BWI76_RS09960: BWI76_RS09960 - Lon protease, at 2,095,731 to 2,097,488
_RS09960
BWI76_RS09965: BWI76_RS09965 - macrodomain Ter protein, at 2,097,674 to 2,098,126
_RS09965
BWI76_RS09970: BWI76_RS09970 - porin OmpA, at 2,098,222 to 2,099,292
_RS09970
BWI76_RS09975: BWI76_RS09975 - cell division inhibitor SulA, at 2,099,646 to 2,100,155
_RS09975
Position (kb)
2098
2099
2100 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 2098.178 kb on - strand at 2098.290 kb on - strand at 2098.489 kb on - strand, within BWI76_RS09970 at 2098.743 kb on - strand, within BWI76_RS09970 at 2099.339 kb on - strand at 2099.339 kb on - strand at 2099.439 kb on - strand at 2099.723 kb on + strand, within BWI76_RS09975 at 2099.724 kb on + strand, within BWI76_RS09975 at 2099.725 kb on + strand, within BWI76_RS09975 at 2099.797 kb on - strand, within BWI76_RS09975 at 2099.893 kb on + strand, within BWI76_RS09975 at 2099.893 kb on + strand, within BWI76_RS09975 at 2099.901 kb on - strand, within BWI76_RS09975 at 2100.118 kb on - strand at 2100.153 kb on - strand at 2100.191 kb on + strand at 2100.206 kb on + strand at 2100.281 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x remove 2,098,178 - -1.4 2,098,290 - -2.3 2,098,489 - BWI76_RS09970 0.25 -2.6 2,098,743 - BWI76_RS09970 0.49 -1.7 2,099,339 - -3.9 2,099,339 - -2.2 2,099,439 - -2.1 2,099,723 + BWI76_RS09975 0.15 +0.1 2,099,724 + BWI76_RS09975 0.15 +1.2 2,099,725 + BWI76_RS09975 0.15 -2.1 2,099,797 - BWI76_RS09975 0.30 -0.2 2,099,893 + BWI76_RS09975 0.48 +0.3 2,099,893 + BWI76_RS09975 0.48 +0.2 2,099,901 - BWI76_RS09975 0.50 +1.2 2,100,118 - +0.2 2,100,153 - +0.4 2,100,191 + -0.9 2,100,206 + -0.1 2,100,281 + +0.8
Or see this region's nucleotide sequence