Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS09755 and BWI76_RS09760 are separated by 72 nucleotides BWI76_RS09760 and BWI76_RS09765 are separated by 147 nucleotides BWI76_RS09765 and BWI76_RS09770 overlap by 54 nucleotides
BWI76_RS09755: BWI76_RS09755 - phosphoserine transaminase, at 2,046,155 to 2,047,243
_RS09755
BWI76_RS09760: BWI76_RS09760 - 3-phosphoshikimate 1-carboxyvinyltransferase, at 2,047,316 to 2,048,599
_RS09760
BWI76_RS09765: BWI76_RS09765 - metalloprotease, at 2,048,747 to 2,049,514
_RS09765
BWI76_RS09770: BWI76_RS09770 - hypothetical protein, at 2,049,461 to 2,049,753
_RS09770
Position (kb)
2047
2048
2049 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 2046.342 kb on - strand, within BWI76_RS09755 at 2046.471 kb on + strand, within BWI76_RS09755 at 2046.808 kb on - strand, within BWI76_RS09755 at 2046.851 kb on + strand, within BWI76_RS09755 at 2046.910 kb on - strand, within BWI76_RS09755 at 2046.910 kb on - strand, within BWI76_RS09755 at 2046.931 kb on + strand, within BWI76_RS09755 at 2046.972 kb on - strand, within BWI76_RS09755 at 2047.428 kb on + strand at 2048.002 kb on + strand, within BWI76_RS09760 at 2048.002 kb on + strand, within BWI76_RS09760 at 2048.002 kb on + strand, within BWI76_RS09760 at 2048.119 kb on - strand, within BWI76_RS09760 at 2048.366 kb on + strand, within BWI76_RS09760 at 2048.434 kb on + strand, within BWI76_RS09760 at 2048.593 kb on + strand at 2048.593 kb on + strand at 2048.837 kb on - strand, within BWI76_RS09765 at 2049.152 kb on - strand, within BWI76_RS09765
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x remove 2,046,342 - BWI76_RS09755 0.17 -1.4 2,046,471 + BWI76_RS09755 0.29 -0.5 2,046,808 - BWI76_RS09755 0.60 -3.9 2,046,851 + BWI76_RS09755 0.64 +0.2 2,046,910 - BWI76_RS09755 0.69 -2.1 2,046,910 - BWI76_RS09755 0.69 -4.8 2,046,931 + BWI76_RS09755 0.71 -2.7 2,046,972 - BWI76_RS09755 0.75 -0.8 2,047,428 + -2.3 2,048,002 + BWI76_RS09760 0.53 -0.9 2,048,002 + BWI76_RS09760 0.53 -2.1 2,048,002 + BWI76_RS09760 0.53 -1.1 2,048,119 - BWI76_RS09760 0.63 -0.9 2,048,366 + BWI76_RS09760 0.82 -3.8 2,048,434 + BWI76_RS09760 0.87 -4.4 2,048,593 + -0.2 2,048,593 + -0.7 2,048,837 - BWI76_RS09765 0.12 -0.1 2,049,152 - BWI76_RS09765 0.53 +0.2
Or see this region's nucleotide sequence