Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS09590 and BWI76_RS09595 are separated by 172 nucleotides BWI76_RS09595 and BWI76_RS09600 overlap by 4 nucleotides
BWI76_RS09590: BWI76_RS09590 - ATP-dependent OLD family endonuclease, at 2,005,650 to 2,007,308
_RS09590
BWI76_RS09595: BWI76_RS09595 - macrolide transporter subunit MacA, at 2,007,481 to 2,008,596
_RS09595
BWI76_RS09600: BWI76_RS09600 - macrolide ABC transporter permease/ATP-binding protein MacB, at 2,008,593 to 2,010,539
_RS09600
Position (kb)
2007
2008
2009 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2006.654 kb on + strand, within BWI76_RS09590 at 2006.665 kb on - strand, within BWI76_RS09590 at 2006.788 kb on + strand, within BWI76_RS09590 at 2006.938 kb on + strand, within BWI76_RS09590 at 2007.241 kb on + strand at 2007.303 kb on + strand at 2007.311 kb on - strand at 2007.332 kb on + strand at 2007.340 kb on - strand at 2007.360 kb on - strand at 2007.360 kb on - strand at 2007.375 kb on - strand at 2007.459 kb on + strand at 2007.545 kb on - strand at 2007.616 kb on + strand, within BWI76_RS09595 at 2007.915 kb on - strand, within BWI76_RS09595 at 2008.219 kb on + strand, within BWI76_RS09595 at 2008.422 kb on + strand, within BWI76_RS09595 at 2008.669 kb on - strand at 2008.822 kb on + strand, within BWI76_RS09600 at 2009.085 kb on - strand, within BWI76_RS09600 at 2009.174 kb on - strand, within BWI76_RS09600 at 2009.179 kb on - strand, within BWI76_RS09600 at 2009.291 kb on - strand, within BWI76_RS09600 at 2009.342 kb on - strand, within BWI76_RS09600
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x remove 2,006,654 + BWI76_RS09590 0.61 -0.8 2,006,665 - BWI76_RS09590 0.61 +0.3 2,006,788 + BWI76_RS09590 0.69 +0.0 2,006,938 + BWI76_RS09590 0.78 +0.6 2,007,241 + -0.4 2,007,303 + +0.3 2,007,311 - -0.1 2,007,332 + -0.1 2,007,340 - -2.8 2,007,360 - -0.1 2,007,360 - +0.6 2,007,375 - +0.8 2,007,459 + +0.8 2,007,545 - -0.3 2,007,616 + BWI76_RS09595 0.12 -0.3 2,007,915 - BWI76_RS09595 0.39 +1.1 2,008,219 + BWI76_RS09595 0.66 -0.6 2,008,422 + BWI76_RS09595 0.84 +1.1 2,008,669 - -0.3 2,008,822 + BWI76_RS09600 0.12 -0.7 2,009,085 - BWI76_RS09600 0.25 -0.6 2,009,174 - BWI76_RS09600 0.30 +0.3 2,009,179 - BWI76_RS09600 0.30 -0.2 2,009,291 - BWI76_RS09600 0.36 +1.0 2,009,342 - BWI76_RS09600 0.38 +0.8
Or see this region's nucleotide sequence