Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS07720 and BWI76_RS07725 overlap by 4 nucleotides BWI76_RS07725 and BWI76_RS07730 overlap by 4 nucleotides BWI76_RS07730 and BWI76_RS07735 are separated by 112 nucleotides
BWI76_RS07720: BWI76_RS07720 - iron-enterobactin transporter ATP-binding protein, at 1,637,776 to 1,638,570
_RS07720
BWI76_RS07725: BWI76_RS07725 - iron-enterobactin transporter permease, at 1,638,567 to 1,639,559
_RS07725
BWI76_RS07730: BWI76_RS07730 - iron-enterobactin transporter membrane protein, at 1,639,556 to 1,640,563
_RS07730
BWI76_RS07735: BWI76_RS07735 - MFS transporter, at 1,640,676 to 1,641,917
_RS07735
Position (kb) 1639
1640
1641 Strain fitness (log2 ratio) -1
0
1 at 1638.661 kb on + strand at 1639.293 kb on + strand, within BWI76_RS07725 at 1640.043 kb on + strand, within BWI76_RS07730 at 1640.527 kb on + strand at 1640.628 kb on + strand at 1640.681 kb on - strand at 1641.025 kb on + strand, within BWI76_RS07735 at 1641.368 kb on + strand, within BWI76_RS07735 at 1641.376 kb on - strand, within BWI76_RS07735 at 1641.389 kb on + strand, within BWI76_RS07735 at 1641.498 kb on + strand, within BWI76_RS07735
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x remove 1,638,661 + -1.4 1,639,293 + BWI76_RS07725 0.73 -0.9 1,640,043 + BWI76_RS07730 0.48 -1.4 1,640,527 + -1.1 1,640,628 + +0.7 1,640,681 - +0.8 1,641,025 + BWI76_RS07735 0.28 +0.1 1,641,368 + BWI76_RS07735 0.56 +0.8 1,641,376 - BWI76_RS07735 0.56 +1.3 1,641,389 + BWI76_RS07735 0.57 -0.5 1,641,498 + BWI76_RS07735 0.66 +0.3
Or see this region's nucleotide sequence