Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS07425 and BWI76_RS07430 are separated by 681 nucleotides BWI76_RS07430 and BWI76_RS07435 are separated by 238 nucleotides
BWI76_RS07425: BWI76_RS07425 - transcriptional regulator, at 1,566,905 to 1,567,522
_RS07425
BWI76_RS07430: BWI76_RS07430 - NUDIX hydrolase, at 1,568,204 to 1,568,575
_RS07430
BWI76_RS07435: BWI76_RS07435 - LacI family transcriptional regulator, at 1,568,814 to 1,569,794
_RS07435
Position (kb) 1568
1569 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1567.204 kb on - strand, within BWI76_RS07425 at 1567.211 kb on - strand at 1567.213 kb on + strand, within BWI76_RS07425 at 1567.221 kb on - strand, within BWI76_RS07425 at 1567.259 kb on - strand, within BWI76_RS07425 at 1567.474 kb on + strand at 1567.474 kb on + strand at 1567.474 kb on + strand at 1567.474 kb on + strand at 1567.474 kb on + strand at 1567.482 kb on - strand at 1567.668 kb on + strand at 1567.676 kb on - strand at 1567.676 kb on - strand at 1567.753 kb on - strand at 1567.880 kb on - strand at 1567.888 kb on + strand at 1567.972 kb on + strand at 1567.984 kb on + strand at 1568.037 kb on + strand at 1568.090 kb on + strand at 1568.098 kb on - strand at 1568.099 kb on - strand at 1568.100 kb on + strand at 1568.103 kb on - strand at 1568.105 kb on + strand at 1568.202 kb on + strand at 1568.223 kb on + strand at 1568.278 kb on + strand, within BWI76_RS07430 at 1568.286 kb on - strand, within BWI76_RS07430 at 1568.322 kb on - strand, within BWI76_RS07430 at 1568.368 kb on + strand, within BWI76_RS07430 at 1568.370 kb on - strand, within BWI76_RS07430 at 1568.502 kb on + strand, within BWI76_RS07430 at 1568.510 kb on - strand, within BWI76_RS07430 at 1568.527 kb on - strand, within BWI76_RS07430 at 1568.606 kb on + strand at 1568.614 kb on - strand at 1568.614 kb on - strand at 1568.631 kb on - strand at 1568.659 kb on - strand at 1568.721 kb on - strand at 1568.848 kb on + strand at 1568.928 kb on + strand, within BWI76_RS07435 at 1569.108 kb on + strand, within BWI76_RS07435 at 1569.340 kb on - strand, within BWI76_RS07435 at 1569.502 kb on + strand, within BWI76_RS07435
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x remove 1,567,204 - BWI76_RS07425 0.48 +0.2 1,567,211 - -0.1 1,567,213 + BWI76_RS07425 0.50 +0.3 1,567,221 - BWI76_RS07425 0.51 -1.6 1,567,259 - BWI76_RS07425 0.57 +1.6 1,567,474 + +0.5 1,567,474 + -1.4 1,567,474 + -1.1 1,567,474 + +0.4 1,567,474 + +0.3 1,567,482 - -2.0 1,567,668 + -0.4 1,567,676 - -1.1 1,567,676 - +0.9 1,567,753 - +0.7 1,567,880 - +0.2 1,567,888 + -0.0 1,567,972 + +1.1 1,567,984 + -0.2 1,568,037 + +0.0 1,568,090 + -0.1 1,568,098 - +1.5 1,568,099 - +0.4 1,568,100 + -2.0 1,568,103 - -0.4 1,568,105 + -1.3 1,568,202 + -0.2 1,568,223 + -1.6 1,568,278 + BWI76_RS07430 0.20 +0.3 1,568,286 - BWI76_RS07430 0.22 +1.2 1,568,322 - BWI76_RS07430 0.32 +0.8 1,568,368 + BWI76_RS07430 0.44 +0.5 1,568,370 - BWI76_RS07430 0.45 -0.2 1,568,502 + BWI76_RS07430 0.80 +1.0 1,568,510 - BWI76_RS07430 0.82 +0.0 1,568,527 - BWI76_RS07430 0.87 +0.6 1,568,606 + +0.8 1,568,614 - -0.0 1,568,614 - -0.1 1,568,631 - +2.3 1,568,659 - +0.1 1,568,721 - +0.1 1,568,848 + -0.3 1,568,928 + BWI76_RS07435 0.12 +1.3 1,569,108 + BWI76_RS07435 0.30 +1.4 1,569,340 - BWI76_RS07435 0.54 +2.5 1,569,502 + BWI76_RS07435 0.70 -0.9
Or see this region's nucleotide sequence