Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS07405

Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS07395 and BWI76_RS07400 are separated by 6 nucleotidesBWI76_RS07400 and BWI76_RS07405 overlap by 1 nucleotidesBWI76_RS07405 and BWI76_RS07410 overlap by 11 nucleotides BWI76_RS07395: BWI76_RS07395 - LuxR family transcriptional regulator, at 1,560,037 to 1,560,672 _RS07395 BWI76_RS07400: BWI76_RS07400 - fimbrial protein, at 1,560,679 to 1,561,359 _RS07400 BWI76_RS07405: BWI76_RS07405 - hypothetical protein, at 1,561,359 to 1,562,978 _RS07405 BWI76_RS07410: BWI76_RS07410 - hypothetical protein, at 1,562,968 to 1,565,505 _RS07410 Position (kb) 1561 1562 1563Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1560.391 kb on + strand, within BWI76_RS07395at 1560.391 kb on + strand, within BWI76_RS07395at 1560.399 kb on + strand, within BWI76_RS07395at 1560.399 kb on + strand, within BWI76_RS07395at 1560.409 kb on + strand, within BWI76_RS07395at 1560.417 kb on - strand, within BWI76_RS07395at 1560.417 kb on - strand, within BWI76_RS07395at 1560.417 kb on - strand, within BWI76_RS07395at 1560.471 kb on + strand, within BWI76_RS07395at 1560.471 kb on + strand, within BWI76_RS07395at 1560.479 kb on - strand, within BWI76_RS07395at 1560.480 kb on + strand, within BWI76_RS07395at 1560.480 kb on + strand, within BWI76_RS07395at 1560.480 kb on + strand, within BWI76_RS07395at 1560.480 kb on + strand, within BWI76_RS07395at 1560.480 kb on + strand, within BWI76_RS07395at 1560.480 kb on + strand, within BWI76_RS07395at 1560.480 kb on + strand, within BWI76_RS07395at 1560.480 kb on + strand, within BWI76_RS07395at 1560.480 kb on + strand, within BWI76_RS07395at 1560.488 kb on - strand, within BWI76_RS07395at 1560.488 kb on - strand, within BWI76_RS07395at 1560.488 kb on - strand, within BWI76_RS07395at 1560.488 kb on - strand, within BWI76_RS07395at 1560.488 kb on - strand, within BWI76_RS07395at 1560.516 kb on + strand, within BWI76_RS07395at 1560.531 kb on - strand, within BWI76_RS07395at 1560.540 kb on + strand, within BWI76_RS07395at 1560.543 kb on - strand, within BWI76_RS07395at 1560.585 kb on - strand, within BWI76_RS07395at 1560.647 kb on + strandat 1560.659 kb on - strandat 1560.662 kb on + strandat 1560.711 kb on - strandat 1560.740 kb on + strandat 1560.765 kb on + strand, within BWI76_RS07400at 1560.773 kb on - strand, within BWI76_RS07400at 1560.773 kb on - strand, within BWI76_RS07400at 1560.773 kb on - strand, within BWI76_RS07400at 1560.776 kb on + strand, within BWI76_RS07400at 1560.776 kb on + strand, within BWI76_RS07400at 1560.776 kb on + strand, within BWI76_RS07400at 1560.776 kb on + strand, within BWI76_RS07400at 1560.776 kb on + strand, within BWI76_RS07400at 1560.776 kb on + strand, within BWI76_RS07400at 1560.776 kb on + strand, within BWI76_RS07400at 1560.779 kb on - strand, within BWI76_RS07400at 1560.781 kb on + strand, within BWI76_RS07400at 1560.784 kb on - strand, within BWI76_RS07400at 1560.784 kb on - strand, within BWI76_RS07400at 1560.784 kb on - strand, within BWI76_RS07400at 1560.784 kb on - strand, within BWI76_RS07400at 1560.784 kb on - strand, within BWI76_RS07400at 1560.784 kb on - strand, within BWI76_RS07400at 1560.784 kb on - strand, within BWI76_RS07400at 1560.784 kb on - strand, within BWI76_RS07400at 1560.793 kb on - strand, within BWI76_RS07400at 1560.794 kb on - strand, within BWI76_RS07400at 1560.829 kb on + strand, within BWI76_RS07400at 1560.886 kb on + strand, within BWI76_RS07400at 1560.927 kb on - strand, within BWI76_RS07400at 1560.942 kb on + strand, within BWI76_RS07400at 1560.942 kb on + strand, within BWI76_RS07400at 1560.942 kb on + strand, within BWI76_RS07400at 1560.942 kb on + strand, within BWI76_RS07400at 1560.942 kb on + strand, within BWI76_RS07400at 1560.942 kb on + strand, within BWI76_RS07400at 1560.950 kb on - strand, within BWI76_RS07400at 1560.950 kb on - strand, within BWI76_RS07400at 1560.950 kb on - strand, within BWI76_RS07400at 1560.950 kb on - strand, within BWI76_RS07400at 1560.950 kb on - strand, within BWI76_RS07400at 1560.950 kb on - strand, within BWI76_RS07400at 1560.950 kb on - strand, within BWI76_RS07400at 1560.952 kb on + strand, within BWI76_RS07400at 1560.960 kb on - strand, within BWI76_RS07400at 1560.966 kb on + strand, within BWI76_RS07400at 1561.000 kb on + strand, within BWI76_RS07400at 1561.000 kb on + strand, within BWI76_RS07400at 1561.000 kb on + strand, within BWI76_RS07400at 1561.008 kb on - strand, within BWI76_RS07400at 1561.011 kb on + strand, within BWI76_RS07400at 1561.023 kb on + strand, within BWI76_RS07400at 1561.023 kb on + strandat 1561.023 kb on + strand, within BWI76_RS07400at 1561.023 kb on + strand, within BWI76_RS07400at 1561.023 kb on + strand, within BWI76_RS07400at 1561.023 kb on + strandat 1561.031 kb on - strand, within BWI76_RS07400at 1561.031 kb on - strand, within BWI76_RS07400at 1561.031 kb on - strand, within BWI76_RS07400at 1561.031 kb on - strand, within BWI76_RS07400at 1561.043 kb on - strand, within BWI76_RS07400at 1561.043 kb on - strand, within BWI76_RS07400at 1561.070 kb on + strand, within BWI76_RS07400at 1561.070 kb on + strand, within BWI76_RS07400at 1561.070 kb on + strandat 1561.070 kb on + strand, within BWI76_RS07400at 1561.070 kb on + strand, within BWI76_RS07400at 1561.070 kb on + strand, within BWI76_RS07400at 1561.070 kb on + strand, within BWI76_RS07400at 1561.076 kb on - strand, within BWI76_RS07400at 1561.078 kb on - strand, within BWI76_RS07400at 1561.078 kb on - strand, within BWI76_RS07400at 1561.097 kb on + strand, within BWI76_RS07400at 1561.097 kb on + strand, within BWI76_RS07400at 1561.105 kb on - strand, within BWI76_RS07400at 1561.105 kb on - strand, within BWI76_RS07400at 1561.105 kb on - strand, within BWI76_RS07400at 1561.109 kb on + strand, within BWI76_RS07400at 1561.112 kb on + strand, within BWI76_RS07400at 1561.112 kb on + strand, within BWI76_RS07400at 1561.114 kb on + strand, within BWI76_RS07400at 1561.117 kb on + strand, within BWI76_RS07400at 1561.122 kb on - strand, within BWI76_RS07400at 1561.127 kb on + strand, within BWI76_RS07400at 1561.132 kb on + strand, within BWI76_RS07400at 1561.132 kb on + strand, within BWI76_RS07400at 1561.139 kb on + strand, within BWI76_RS07400at 1561.139 kb on + strand, within BWI76_RS07400at 1561.139 kb on + strand, within BWI76_RS07400at 1561.139 kb on + strand, within BWI76_RS07400at 1561.140 kb on - strand, within BWI76_RS07400at 1561.140 kb on - strand, within BWI76_RS07400at 1561.140 kb on - strand, within BWI76_RS07400at 1561.145 kb on - strand, within BWI76_RS07400at 1561.147 kb on - strand, within BWI76_RS07400at 1561.147 kb on - strand, within BWI76_RS07400at 1561.147 kb on - strand, within BWI76_RS07400at 1561.147 kb on - strand, within BWI76_RS07400at 1561.147 kb on - strand, within BWI76_RS07400at 1561.167 kb on + strand, within BWI76_RS07400at 1561.208 kb on + strand, within BWI76_RS07400at 1561.223 kb on - strand, within BWI76_RS07400at 1561.252 kb on + strand, within BWI76_RS07400at 1561.290 kb on + strand, within BWI76_RS07400at 1561.302 kb on + strandat 1561.302 kb on - strandat 1561.302 kb on - strandat 1561.304 kb on + strandat 1561.307 kb on + strandat 1561.365 kb on + strandat 1561.370 kb on + strandat 1561.370 kb on + strandat 1561.379 kb on - strandat 1561.383 kb on - strandat 1561.390 kb on - strandat 1561.397 kb on + strandat 1561.405 kb on - strandat 1561.405 kb on - strandat 1561.530 kb on + strand, within BWI76_RS07405at 1561.563 kb on - strand, within BWI76_RS07405at 1561.646 kb on - strand, within BWI76_RS07405at 1561.695 kb on + strand, within BWI76_RS07405at 1561.775 kb on + strand, within BWI76_RS07405at 1561.816 kb on + strand, within BWI76_RS07405at 1561.873 kb on - strand, within BWI76_RS07405at 1561.873 kb on - strand, within BWI76_RS07405at 1561.955 kb on - strand, within BWI76_RS07405at 1562.098 kb on - strand, within BWI76_RS07405at 1562.119 kb on - strand, within BWI76_RS07405at 1562.252 kb on - strand, within BWI76_RS07405at 1562.253 kb on - strand, within BWI76_RS07405at 1562.253 kb on - strand, within BWI76_RS07405at 1562.253 kb on - strand, within BWI76_RS07405at 1562.278 kb on - strand, within BWI76_RS07405at 1562.290 kb on - strand, within BWI76_RS07405at 1562.290 kb on - strand, within BWI76_RS07405at 1562.290 kb on - strand, within BWI76_RS07405at 1562.532 kb on + strand, within BWI76_RS07405at 1562.734 kb on + strand, within BWI76_RS07405at 1562.741 kb on - strand, within BWI76_RS07405at 1562.764 kb on - strand, within BWI76_RS07405at 1562.765 kb on - strand, within BWI76_RS07405at 1562.774 kb on - strand, within BWI76_RS07405at 1563.066 kb on + strandat 1563.371 kb on - strand, within BWI76_RS07410at 1563.464 kb on + strand, within BWI76_RS07410at 1563.497 kb on - strand, within BWI76_RS07410at 1563.567 kb on + strand, within BWI76_RS07410at 1563.577 kb on + strand, within BWI76_RS07410at 1563.759 kb on + strand, within BWI76_RS07410at 1563.811 kb on - strand, within BWI76_RS07410

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x
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1,560,391 + BWI76_RS07395 0.56 +0.6
1,560,391 + BWI76_RS07395 0.56 +0.7
1,560,399 + BWI76_RS07395 0.57 -1.1
1,560,399 + BWI76_RS07395 0.57 -0.3
1,560,409 + BWI76_RS07395 0.58 -0.7
1,560,417 - BWI76_RS07395 0.60 +3.4
1,560,417 - BWI76_RS07395 0.60 -0.2
1,560,417 - BWI76_RS07395 0.60 +1.4
1,560,471 + BWI76_RS07395 0.68 +0.5
1,560,471 + BWI76_RS07395 0.68 -1.1
1,560,479 - BWI76_RS07395 0.69 -1.4
1,560,480 + BWI76_RS07395 0.70 -2.9
1,560,480 + BWI76_RS07395 0.70 +0.4
1,560,480 + BWI76_RS07395 0.70 -0.4
1,560,480 + BWI76_RS07395 0.70 -1.0
1,560,480 + BWI76_RS07395 0.70 -0.3
1,560,480 + BWI76_RS07395 0.70 +0.4
1,560,480 + BWI76_RS07395 0.70 -0.0
1,560,480 + BWI76_RS07395 0.70 -2.5
1,560,480 + BWI76_RS07395 0.70 -2.1
1,560,488 - BWI76_RS07395 0.71 -0.1
1,560,488 - BWI76_RS07395 0.71 -2.7
1,560,488 - BWI76_RS07395 0.71 +0.1
1,560,488 - BWI76_RS07395 0.71 -0.5
1,560,488 - BWI76_RS07395 0.71 -0.4
1,560,516 + BWI76_RS07395 0.75 -2.3
1,560,531 - BWI76_RS07395 0.78 -0.5
1,560,540 + BWI76_RS07395 0.79 -0.5
1,560,543 - BWI76_RS07395 0.80 +0.3
1,560,585 - BWI76_RS07395 0.86 -1.7
1,560,647 + +0.7
1,560,659 - -1.3
1,560,662 + -2.7
1,560,711 - -0.9
1,560,740 + +0.9
1,560,765 + BWI76_RS07400 0.13 +1.0
1,560,773 - BWI76_RS07400 0.14 +0.9
1,560,773 - BWI76_RS07400 0.14 -0.0
1,560,773 - BWI76_RS07400 0.14 -0.1
1,560,776 + BWI76_RS07400 0.14 +0.7
1,560,776 + BWI76_RS07400 0.14 -1.6
1,560,776 + BWI76_RS07400 0.14 -2.2
1,560,776 + BWI76_RS07400 0.14 -1.0
1,560,776 + BWI76_RS07400 0.14 +1.0
1,560,776 + BWI76_RS07400 0.14 +2.6
1,560,776 + BWI76_RS07400 0.14 +1.3
1,560,779 - BWI76_RS07400 0.15 -0.7
1,560,781 + BWI76_RS07400 0.15 -1.8
1,560,784 - BWI76_RS07400 0.15 -1.4
1,560,784 - BWI76_RS07400 0.15 -1.7
1,560,784 - BWI76_RS07400 0.15 +0.7
1,560,784 - BWI76_RS07400 0.15 +0.4
1,560,784 - BWI76_RS07400 0.15 +0.4
1,560,784 - BWI76_RS07400 0.15 -1.0
1,560,784 - BWI76_RS07400 0.15 -0.7
1,560,784 - BWI76_RS07400 0.15 -1.4
1,560,793 - BWI76_RS07400 0.17 +0.5
1,560,794 - BWI76_RS07400 0.17 -0.0
1,560,829 + BWI76_RS07400 0.22 +1.9
1,560,886 + BWI76_RS07400 0.30 -1.9
1,560,927 - BWI76_RS07400 0.36 -0.3
1,560,942 + BWI76_RS07400 0.39 +0.2
1,560,942 + BWI76_RS07400 0.39 +0.9
1,560,942 + BWI76_RS07400 0.39 +0.3
1,560,942 + BWI76_RS07400 0.39 +1.0
1,560,942 + BWI76_RS07400 0.39 +1.5
1,560,942 + BWI76_RS07400 0.39 -1.6
1,560,950 - BWI76_RS07400 0.40 -0.7
1,560,950 - BWI76_RS07400 0.40 +0.6
1,560,950 - BWI76_RS07400 0.40 +1.4
1,560,950 - BWI76_RS07400 0.40 -1.6
1,560,950 - BWI76_RS07400 0.40 -0.4
1,560,950 - BWI76_RS07400 0.40 +0.2
1,560,950 - BWI76_RS07400 0.40 -0.0
1,560,952 + BWI76_RS07400 0.40 -2.5
1,560,960 - BWI76_RS07400 0.41 +1.4
1,560,966 + BWI76_RS07400 0.42 -0.8
1,561,000 + BWI76_RS07400 0.47 +0.6
1,561,000 + BWI76_RS07400 0.47 -3.2
1,561,000 + BWI76_RS07400 0.47 +0.7
1,561,008 - BWI76_RS07400 0.48 -0.1
1,561,011 + BWI76_RS07400 0.49 +0.4
1,561,023 + BWI76_RS07400 0.51 -0.2
1,561,023 + +2.9
1,561,023 + BWI76_RS07400 0.51 +0.7
1,561,023 + BWI76_RS07400 0.51 -1.4
1,561,023 + BWI76_RS07400 0.51 +1.0
1,561,023 + +0.3
1,561,031 - BWI76_RS07400 0.52 -1.1
1,561,031 - BWI76_RS07400 0.52 -0.6
1,561,031 - BWI76_RS07400 0.52 +0.4
1,561,031 - BWI76_RS07400 0.52 -0.2
1,561,043 - BWI76_RS07400 0.53 +0.3
1,561,043 - BWI76_RS07400 0.53 -1.1
1,561,070 + BWI76_RS07400 0.57 +1.3
1,561,070 + BWI76_RS07400 0.57 +0.1
1,561,070 + +1.9
1,561,070 + BWI76_RS07400 0.57 +0.5
1,561,070 + BWI76_RS07400 0.57 +0.8
1,561,070 + BWI76_RS07400 0.57 -0.0
1,561,070 + BWI76_RS07400 0.57 -1.0
1,561,076 - BWI76_RS07400 0.58 +2.6
1,561,078 - BWI76_RS07400 0.59 +0.6
1,561,078 - BWI76_RS07400 0.59 -0.6
1,561,097 + BWI76_RS07400 0.61 +0.1
1,561,097 + BWI76_RS07400 0.61 -0.8
1,561,105 - BWI76_RS07400 0.63 -0.2
1,561,105 - BWI76_RS07400 0.63 -0.4
1,561,105 - BWI76_RS07400 0.63 -1.0
1,561,109 + BWI76_RS07400 0.63 -0.1
1,561,112 + BWI76_RS07400 0.64 -1.6
1,561,112 + BWI76_RS07400 0.64 -1.2
1,561,114 + BWI76_RS07400 0.64 +0.2
1,561,117 + BWI76_RS07400 0.64 -1.2
1,561,122 - BWI76_RS07400 0.65 -1.6
1,561,127 + BWI76_RS07400 0.66 -0.4
1,561,132 + BWI76_RS07400 0.67 +0.1
1,561,132 + BWI76_RS07400 0.67 +0.2
1,561,139 + BWI76_RS07400 0.68 -0.5
1,561,139 + BWI76_RS07400 0.68 +0.3
1,561,139 + BWI76_RS07400 0.68 +0.4
1,561,139 + BWI76_RS07400 0.68 +0.6
1,561,140 - BWI76_RS07400 0.68 -0.1
1,561,140 - BWI76_RS07400 0.68 +0.5
1,561,140 - BWI76_RS07400 0.68 -0.1
1,561,145 - BWI76_RS07400 0.68 +4.4
1,561,147 - BWI76_RS07400 0.69 -0.1
1,561,147 - BWI76_RS07400 0.69 -1.1
1,561,147 - BWI76_RS07400 0.69 +0.5
1,561,147 - BWI76_RS07400 0.69 -0.4
1,561,147 - BWI76_RS07400 0.69 -1.5
1,561,167 + BWI76_RS07400 0.72 -0.6
1,561,208 + BWI76_RS07400 0.78 +0.4
1,561,223 - BWI76_RS07400 0.80 -0.9
1,561,252 + BWI76_RS07400 0.84 +1.1
1,561,290 + BWI76_RS07400 0.90 +0.3
1,561,302 + -0.6
1,561,302 - +0.0
1,561,302 - -2.0
1,561,304 + +1.6
1,561,307 + -0.6
1,561,365 + +0.1
1,561,370 + +0.3
1,561,370 + -1.6
1,561,379 - -0.2
1,561,383 - -1.1
1,561,390 - -0.1
1,561,397 + +1.5
1,561,405 - +0.7
1,561,405 - +1.2
1,561,530 + BWI76_RS07405 0.11 -2.6
1,561,563 - BWI76_RS07405 0.13 -0.7
1,561,646 - BWI76_RS07405 0.18 +0.6
1,561,695 + BWI76_RS07405 0.21 -0.2
1,561,775 + BWI76_RS07405 0.26 -0.9
1,561,816 + BWI76_RS07405 0.28 +0.5
1,561,873 - BWI76_RS07405 0.32 -0.4
1,561,873 - BWI76_RS07405 0.32 +0.1
1,561,955 - BWI76_RS07405 0.37 +0.7
1,562,098 - BWI76_RS07405 0.46 +0.4
1,562,119 - BWI76_RS07405 0.47 +0.8
1,562,252 - BWI76_RS07405 0.55 -0.5
1,562,253 - BWI76_RS07405 0.55 +1.8
1,562,253 - BWI76_RS07405 0.55 +3.7
1,562,253 - BWI76_RS07405 0.55 -0.9
1,562,278 - BWI76_RS07405 0.57 +2.4
1,562,290 - BWI76_RS07405 0.57 +0.4
1,562,290 - BWI76_RS07405 0.57 -0.4
1,562,290 - BWI76_RS07405 0.57 +1.9
1,562,532 + BWI76_RS07405 0.72 +0.2
1,562,734 + BWI76_RS07405 0.85 -1.1
1,562,741 - BWI76_RS07405 0.85 -0.8
1,562,764 - BWI76_RS07405 0.87 +1.0
1,562,765 - BWI76_RS07405 0.87 -0.5
1,562,774 - BWI76_RS07405 0.87 +1.1
1,563,066 + +1.2
1,563,371 - BWI76_RS07410 0.16 -0.6
1,563,464 + BWI76_RS07410 0.20 +0.9
1,563,497 - BWI76_RS07410 0.21 +0.0
1,563,567 + BWI76_RS07410 0.24 +1.2
1,563,577 + BWI76_RS07410 0.24 -0.1
1,563,759 + BWI76_RS07410 0.31 +0.5
1,563,811 - BWI76_RS07410 0.33 -0.4

Or see this region's nucleotide sequence