Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS06260 and BWI76_RS06265 are separated by 136 nucleotides BWI76_RS06265 and BWI76_RS06270 are separated by 24 nucleotides BWI76_RS06270 and BWI76_RS06275 are separated by 123 nucleotides
BWI76_RS06260: BWI76_RS06260 - hydrolase, at 1,316,136 to 1,316,777
_RS06260
BWI76_RS06265: BWI76_RS06265 - antibiotic biosynthesis monooxygenase, at 1,316,914 to 1,317,459
_RS06265
BWI76_RS06270: BWI76_RS06270 - amidohydrolase, at 1,317,484 to 1,319,352
_RS06270
BWI76_RS06275: BWI76_RS06275 - beta-carotene 15,15'-monooxygenase, at 1,319,476 to 1,322,127
_RS06275
Position (kb) 1317
1318
1319
1320 Strain fitness (log2 ratio) -1
0
1
2 at 1316.489 kb on - strand, within BWI76_RS06260 at 1316.489 kb on - strand, within BWI76_RS06260 at 1316.525 kb on + strand, within BWI76_RS06260 at 1316.553 kb on - strand, within BWI76_RS06260 at 1316.737 kb on - strand at 1316.833 kb on - strand at 1317.171 kb on + strand, within BWI76_RS06265 at 1317.299 kb on + strand, within BWI76_RS06265 at 1317.299 kb on + strand, within BWI76_RS06265 at 1317.323 kb on + strand, within BWI76_RS06265 at 1317.500 kb on + strand at 1317.812 kb on + strand, within BWI76_RS06270 at 1317.812 kb on + strand, within BWI76_RS06270 at 1317.820 kb on - strand, within BWI76_RS06270 at 1317.820 kb on - strand, within BWI76_RS06270 at 1317.916 kb on - strand, within BWI76_RS06270 at 1318.154 kb on + strand, within BWI76_RS06270 at 1318.154 kb on + strand, within BWI76_RS06270 at 1318.162 kb on - strand, within BWI76_RS06270 at 1318.202 kb on + strand, within BWI76_RS06270 at 1318.322 kb on - strand, within BWI76_RS06270 at 1318.380 kb on + strand, within BWI76_RS06270 at 1318.454 kb on - strand, within BWI76_RS06270 at 1318.828 kb on + strand, within BWI76_RS06270 at 1319.054 kb on + strand, within BWI76_RS06270 at 1319.172 kb on - strand at 1319.323 kb on + strand at 1319.408 kb on + strand at 1319.501 kb on + strand at 1319.640 kb on - strand at 1319.660 kb on - strand at 1319.917 kb on + strand, within BWI76_RS06275 at 1319.942 kb on - strand, within BWI76_RS06275 at 1319.979 kb on + strand, within BWI76_RS06275 at 1319.987 kb on - strand, within BWI76_RS06275 at 1319.992 kb on - strand, within BWI76_RS06275 at 1320.007 kb on - strand, within BWI76_RS06275 at 1320.091 kb on - strand, within BWI76_RS06275 at 1320.176 kb on + strand, within BWI76_RS06275 at 1320.209 kb on + strand, within BWI76_RS06275 at 1320.350 kb on - strand, within BWI76_RS06275
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x remove 1,316,489 - BWI76_RS06260 0.55 -0.3 1,316,489 - BWI76_RS06260 0.55 +0.1 1,316,525 + BWI76_RS06260 0.61 -0.8 1,316,553 - BWI76_RS06260 0.65 -0.7 1,316,737 - +1.3 1,316,833 - +1.2 1,317,171 + BWI76_RS06265 0.47 -0.8 1,317,299 + BWI76_RS06265 0.71 +1.7 1,317,299 + BWI76_RS06265 0.71 +0.2 1,317,323 + BWI76_RS06265 0.75 -0.2 1,317,500 + -0.7 1,317,812 + BWI76_RS06270 0.18 +0.7 1,317,812 + BWI76_RS06270 0.18 +0.2 1,317,820 - BWI76_RS06270 0.18 -0.4 1,317,820 - BWI76_RS06270 0.18 +0.8 1,317,916 - BWI76_RS06270 0.23 +0.3 1,318,154 + BWI76_RS06270 0.36 +0.5 1,318,154 + BWI76_RS06270 0.36 -0.5 1,318,162 - BWI76_RS06270 0.36 -0.1 1,318,202 + BWI76_RS06270 0.38 +0.4 1,318,322 - BWI76_RS06270 0.45 -0.9 1,318,380 + BWI76_RS06270 0.48 -0.3 1,318,454 - BWI76_RS06270 0.52 +0.9 1,318,828 + BWI76_RS06270 0.72 +1.0 1,319,054 + BWI76_RS06270 0.84 +1.9 1,319,172 - -0.7 1,319,323 + -1.1 1,319,408 + +0.4 1,319,501 + -0.7 1,319,640 - -1.0 1,319,660 - -0.9 1,319,917 + BWI76_RS06275 0.17 -0.7 1,319,942 - BWI76_RS06275 0.18 +0.6 1,319,979 + BWI76_RS06275 0.19 -0.9 1,319,987 - BWI76_RS06275 0.19 +1.5 1,319,992 - BWI76_RS06275 0.19 -1.1 1,320,007 - BWI76_RS06275 0.20 -0.5 1,320,091 - BWI76_RS06275 0.23 +1.3 1,320,176 + BWI76_RS06275 0.26 +0.9 1,320,209 + BWI76_RS06275 0.28 -0.3 1,320,350 - BWI76_RS06275 0.33 -0.6
Or see this region's nucleotide sequence