Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS03425 and BWI76_RS03430 overlap by 7 nucleotides BWI76_RS03430 and BWI76_RS03435 are separated by 23 nucleotides BWI76_RS03435 and BWI76_RS03440 are separated by 52 nucleotides
BWI76_RS03425: BWI76_RS03425 - dihydrodipicolinate synthase family protein, at 704,635 to 705,546
_RS03425
BWI76_RS03430: BWI76_RS03430 - short-chain dehydrogenase, at 705,540 to 706,367
_RS03430
BWI76_RS03435: BWI76_RS03435 - mandelate racemase/muconate lactonizing protein, at 706,391 to 707,494
_RS03435
BWI76_RS03440: BWI76_RS03440 - MFS transporter, at 707,547 to 708,998
_RS03440
Position (kb) 706
707
708 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 705.420 kb on - strand, within BWI76_RS03425 at 705.662 kb on + strand, within BWI76_RS03430 at 705.698 kb on + strand, within BWI76_RS03430 at 706.000 kb on - strand, within BWI76_RS03430 at 706.062 kb on + strand, within BWI76_RS03430 at 706.065 kb on - strand, within BWI76_RS03430 at 706.128 kb on + strand, within BWI76_RS03430 at 706.187 kb on - strand, within BWI76_RS03430 at 706.280 kb on - strand, within BWI76_RS03430 at 706.290 kb on - strand at 706.305 kb on - strand at 706.667 kb on + strand, within BWI76_RS03435 at 706.714 kb on + strand, within BWI76_RS03435 at 706.740 kb on + strand, within BWI76_RS03435 at 707.059 kb on + strand, within BWI76_RS03435 at 707.165 kb on - strand, within BWI76_RS03435 at 707.277 kb on - strand, within BWI76_RS03435 at 707.409 kb on + strand at 707.432 kb on - strand at 707.537 kb on - strand at 707.738 kb on + strand, within BWI76_RS03440 at 707.746 kb on - strand, within BWI76_RS03440 at 707.756 kb on - strand, within BWI76_RS03440 at 707.917 kb on - strand, within BWI76_RS03440 at 707.922 kb on + strand, within BWI76_RS03440 at 708.190 kb on - strand, within BWI76_RS03440 at 708.287 kb on - strand, within BWI76_RS03440 at 708.304 kb on + strand, within BWI76_RS03440
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x remove 705,420 - BWI76_RS03425 0.86 -0.4 705,662 + BWI76_RS03430 0.15 +1.4 705,698 + BWI76_RS03430 0.19 +0.1 706,000 - BWI76_RS03430 0.56 +0.2 706,062 + BWI76_RS03430 0.63 -0.1 706,065 - BWI76_RS03430 0.63 +0.5 706,128 + BWI76_RS03430 0.71 +1.2 706,187 - BWI76_RS03430 0.78 -2.0 706,280 - BWI76_RS03430 0.89 +0.4 706,290 - +1.1 706,305 - +0.1 706,667 + BWI76_RS03435 0.25 +0.0 706,714 + BWI76_RS03435 0.29 +0.9 706,740 + BWI76_RS03435 0.32 +0.2 707,059 + BWI76_RS03435 0.61 +1.0 707,165 - BWI76_RS03435 0.70 +4.2 707,277 - BWI76_RS03435 0.80 +0.5 707,409 + +0.6 707,432 - +0.7 707,537 - +0.3 707,738 + BWI76_RS03440 0.13 +0.6 707,746 - BWI76_RS03440 0.14 -0.7 707,756 - BWI76_RS03440 0.14 +1.2 707,917 - BWI76_RS03440 0.25 -0.7 707,922 + BWI76_RS03440 0.26 -0.4 708,190 - BWI76_RS03440 0.44 +0.3 708,287 - BWI76_RS03440 0.51 +1.8 708,304 + BWI76_RS03440 0.52 -1.0
Or see this region's nucleotide sequence