Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS02640

Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS02630 and BWI76_RS02635 are separated by 13 nucleotidesBWI76_RS02635 and BWI76_RS02640 are separated by 9 nucleotidesBWI76_RS02640 and BWI76_RS02645 overlap by 1 nucleotidesBWI76_RS02645 and BWI76_RS02650 are separated by 61 nucleotides BWI76_RS02630: BWI76_RS02630 - PTS ascorbate transporter subunit IIA, at 537,785 to 538,252 _RS02630 BWI76_RS02635: BWI76_RS02635 - 3-keto-L-gulonate-6-phosphate decarboxylase, at 538,266 to 538,916 _RS02635 BWI76_RS02640: BWI76_RS02640 - xylulose 5-phosphate 3-epimerase, at 538,926 to 539,780 _RS02640 BWI76_RS02645: BWI76_RS02645 - L-ribulose-5-phosphate 4-epimerase, at 539,780 to 540,466 _RS02645 BWI76_RS02650: BWI76_RS02650 - MFS transporter, at 540,528 to 541,721 _RS02650 Position (kb) 538 539 540Strain fitness (log2 ratio) -2 -1 0 1 2at 537.941 kb on - strand, within BWI76_RS02630at 538.020 kb on + strand, within BWI76_RS02630at 538.154 kb on - strand, within BWI76_RS02630at 538.156 kb on + strand, within BWI76_RS02630at 538.168 kb on + strand, within BWI76_RS02630at 538.334 kb on + strand, within BWI76_RS02635at 538.342 kb on - strand, within BWI76_RS02635at 538.538 kb on + strand, within BWI76_RS02635at 538.707 kb on - strand, within BWI76_RS02635at 538.731 kb on + strand, within BWI76_RS02635at 538.810 kb on - strand, within BWI76_RS02635at 538.883 kb on + strandat 538.891 kb on - strandat 538.904 kb on + strandat 538.980 kb on - strandat 539.103 kb on - strand, within BWI76_RS02640at 539.103 kb on - strand, within BWI76_RS02640at 539.103 kb on - strand, within BWI76_RS02640at 539.113 kb on - strand, within BWI76_RS02640at 539.187 kb on - strand, within BWI76_RS02640at 539.335 kb on + strand, within BWI76_RS02640at 539.335 kb on + strand, within BWI76_RS02640at 539.427 kb on + strand, within BWI76_RS02640at 539.435 kb on - strand, within BWI76_RS02640at 539.514 kb on - strand, within BWI76_RS02640at 539.546 kb on - strand, within BWI76_RS02640at 539.566 kb on + strand, within BWI76_RS02640at 539.629 kb on + strand, within BWI76_RS02640at 539.755 kb on + strandat 539.765 kb on + strandat 539.773 kb on - strandat 539.778 kb on - strandat 539.860 kb on + strand, within BWI76_RS02645at 539.967 kb on + strand, within BWI76_RS02645at 540.053 kb on + strand, within BWI76_RS02645at 540.053 kb on + strand, within BWI76_RS02645at 540.061 kb on - strand, within BWI76_RS02645at 540.080 kb on + strand, within BWI76_RS02645at 540.087 kb on - strand, within BWI76_RS02645at 540.184 kb on + strand, within BWI76_RS02645at 540.245 kb on - strand, within BWI76_RS02645at 540.372 kb on + strand, within BWI76_RS02645at 540.385 kb on + strand, within BWI76_RS02645at 540.516 kb on - strandat 540.585 kb on + strandat 540.644 kb on + strandat 540.652 kb on - strand, within BWI76_RS02650at 540.652 kb on - strand, within BWI76_RS02650at 540.673 kb on - strand, within BWI76_RS02650at 540.673 kb on - strand, within BWI76_RS02650

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x
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537,941 - BWI76_RS02630 0.33 +0.4
538,020 + BWI76_RS02630 0.50 +1.4
538,154 - BWI76_RS02630 0.79 -0.8
538,156 + BWI76_RS02630 0.79 -0.3
538,168 + BWI76_RS02630 0.82 -0.5
538,334 + BWI76_RS02635 0.10 +0.8
538,342 - BWI76_RS02635 0.12 -0.1
538,538 + BWI76_RS02635 0.42 -0.7
538,707 - BWI76_RS02635 0.68 +1.7
538,731 + BWI76_RS02635 0.71 -0.8
538,810 - BWI76_RS02635 0.84 -1.8
538,883 + -0.6
538,891 - -0.8
538,904 + +0.6
538,980 - +1.0
539,103 - BWI76_RS02640 0.21 +1.3
539,103 - BWI76_RS02640 0.21 +0.8
539,103 - BWI76_RS02640 0.21 -0.0
539,113 - BWI76_RS02640 0.22 -0.0
539,187 - BWI76_RS02640 0.31 +2.5
539,335 + BWI76_RS02640 0.48 -0.3
539,335 + BWI76_RS02640 0.48 -2.0
539,427 + BWI76_RS02640 0.59 +0.0
539,435 - BWI76_RS02640 0.60 -0.7
539,514 - BWI76_RS02640 0.69 -0.7
539,546 - BWI76_RS02640 0.73 +2.5
539,566 + BWI76_RS02640 0.75 -0.2
539,629 + BWI76_RS02640 0.82 -0.1
539,755 + +2.6
539,765 + +1.6
539,773 - -0.0
539,778 - -0.0
539,860 + BWI76_RS02645 0.12 +0.4
539,967 + BWI76_RS02645 0.27 +0.6
540,053 + BWI76_RS02645 0.40 -0.2
540,053 + BWI76_RS02645 0.40 -1.3
540,061 - BWI76_RS02645 0.41 -0.8
540,080 + BWI76_RS02645 0.44 -0.8
540,087 - BWI76_RS02645 0.45 -0.7
540,184 + BWI76_RS02645 0.59 -0.0
540,245 - BWI76_RS02645 0.68 -0.5
540,372 + BWI76_RS02645 0.86 -0.3
540,385 + BWI76_RS02645 0.88 +0.7
540,516 - +0.4
540,585 + +0.0
540,644 + +1.0
540,652 - BWI76_RS02650 0.10 +1.6
540,652 - BWI76_RS02650 0.10 -1.3
540,673 - BWI76_RS02650 0.12 -1.2
540,673 - BWI76_RS02650 0.12 -0.4

Or see this region's nucleotide sequence