Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS01830 and BWI76_RS01835 are separated by 27 nucleotides BWI76_RS01835 and BWI76_RS01840 are separated by 55 nucleotides
BWI76_RS01830: BWI76_RS01830 - maltose ABC transporter, substrate-binding component MalE <small>(from data)</small>, at 373,299 to 374,489
_RS01830
BWI76_RS01835: BWI76_RS01835 - chemotaxis protein CheW, at 374,517 to 374,804
_RS01835
BWI76_RS01840: BWI76_RS01840 - maltose ABC transporter, ATPase component (MalK) <small>(from data)</small>, at 374,860 to 375,969
_RS01840
Position (kb) 374
375 Strain fitness (log2 ratio) -2
-1
0
1
2 at 373.643 kb on + strand, within BWI76_RS01830 at 373.681 kb on + strand, within BWI76_RS01830 at 373.684 kb on - strand, within BWI76_RS01830 at 373.716 kb on - strand, within BWI76_RS01830 at 373.860 kb on + strand, within BWI76_RS01830 at 373.969 kb on - strand, within BWI76_RS01830 at 373.978 kb on + strand, within BWI76_RS01830 at 374.161 kb on + strand, within BWI76_RS01830 at 374.580 kb on + strand, within BWI76_RS01835 at 374.586 kb on + strand, within BWI76_RS01835 at 374.594 kb on - strand, within BWI76_RS01835 at 374.642 kb on + strand, within BWI76_RS01835 at 374.789 kb on + strand at 375.168 kb on - strand, within BWI76_RS01840 at 375.681 kb on + strand, within BWI76_RS01840
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x remove 373,643 + BWI76_RS01830 0.29 +0.5 373,681 + BWI76_RS01830 0.32 -0.0 373,684 - BWI76_RS01830 0.32 +0.2 373,716 - BWI76_RS01830 0.35 +0.2 373,860 + BWI76_RS01830 0.47 +0.2 373,969 - BWI76_RS01830 0.56 -0.5 373,978 + BWI76_RS01830 0.57 -1.1 374,161 + BWI76_RS01830 0.72 +0.1 374,580 + BWI76_RS01835 0.22 +2.5 374,586 + BWI76_RS01835 0.24 +0.8 374,594 - BWI76_RS01835 0.27 +0.5 374,642 + BWI76_RS01835 0.43 -2.0 374,789 + -0.4 375,168 - BWI76_RS01840 0.28 +0.1 375,681 + BWI76_RS01840 0.74 -0.6
Or see this region's nucleotide sequence